PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00982.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 487aa    MW: 52287 Da    PI: 7.972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00982.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-1597144148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Zmw_sc00982.1.g00090.1.am.mk  97 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 144
                                   678*******************************************97 PP
2Myb_DNA-binding51.81.8e-16150193146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Zmw_sc00982.1.g00090.1.am.mk 150 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 193
                                   89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.10492144IPR017930Myb domain
SuperFamilySSF466892.89E-2895191IPR009057Homeodomain-like
SMARTSM007178.7E-1196146IPR001005SANT/Myb domain
PfamPF002493.7E-1397144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2298151IPR009057Homeodomain-like
CDDcd001675.04E-9100144No hitNo description
PROSITE profilePS5129425.339145199IPR017930Myb domain
SMARTSM007179.6E-16149197IPR001005SANT/Myb domain
PfamPF002497.5E-15150193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-25152200IPR009057Homeodomain-like
CDDcd001673.62E-11152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MRNSLTYKEG HYRYDVEIYV SLPFPLNSRP GLSSSSTIRA STSSTCTRAR PRDQSRRDRS  60
KIELDRRAGD RSGSMRKPEC PTAAVAAAVS GGAKLRKGLW SPEEDEKLVA YMLRSGQGSW  120
SDVARNAGLQ RCGKSCRLRW INYLRPDLKR GAFSPQEEEL IVSLHAILGN RWSQIAARLP  180
GRTDNEIKNF WNSTIKKRLK SSSSTASSPA PASDHCALSP DQPSNTKLAG GGGGIDASSC  240
PDLADLDRVD GGHHLHAVTS ASGLWMVDSS SSISSSTAAR SYGYGHGGLL PLPDQLRSVA  300
ADNTPPPFFH SHAPPPFKHQ AVSALHGGYY GGHGHQHHGV AVEGCFGRGG EGLFGYVPPL  360
LAEPAAMAAA QDQDRKPLMA SSGNGNNPIT GNSSNNTTET TTTTTTLSNN ESNITDNMNK  420
DSSCLENRNV AAAAAAAVYW DGAHHQQLHM SSRNVMQLQG GGGECCWDLE ELMKDVSSLP  480
FLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28912011110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808414.11e-139myb-related protein 330-like
TrEMBLA0A1E5W8981e-146A0A1E5W898_9POAL; Transcription factor MYB46
STRINGPavir.Ca02370.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545