PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00980.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 19911.6 Da PI: 9.4703 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.4e-10 | 89 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 r WT++ d+l+ +a + + ++ +W+ Iar +g g++ ++k ++q + Zmw_sc00980.1.g00080.1.am.mk 89 RSQWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKSVDEVKTHYQLL 138 679*****************99*************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.2E-9 | 88 | 141 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.818 | 89 | 139 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.5E-7 | 89 | 137 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-12 | 90 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.73E-7 | 92 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MRDPPLSSFV GRRSLFLGDR WHSFWSCTLR LTDALFSSLS RVTHHERTTL QGTSYPAGRP 60 GPITEQGPSA LDQTVVGSLH ISMASMSMRS QWTKQQDKLF EQALAVYDKE TPDRWHNIAR 120 AVGGGKSVDE VKTHYQLLVH DVGRIEKGEV AFPAYRCPGV GSMPMGGYEA DRLKHLKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-23 | 92 | 178 | 11 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154612.1 | 1e-43 | protein RADIALIS-like 3 | ||||
Refseq | XP_020154876.1 | 1e-43 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A453A097 | 3e-42 | A0A453A097_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QTK1 | 3e-42 | N1QTK1_AEGTA; DnaJ homolog subfamily C member 2 | ||||
STRING | EMT00143 | 4e-43 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |