PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00979.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 385aa MW: 40593.3 Da PI: 6.9325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00979.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00025	281	314	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +++eYIk L Zmw_sc00979.1.g00210.1.sm.mkhc 281 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 314 555666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-10	275	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.53E-4	275	318	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-7	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MGDHAEMLHA APAMYNAAGV AAPHGGWWNT AVSASATCST ELAGFSTWSS ALAASYDMAA 60 EGAKAKSATT TSSGSPGNNS SVTFQEPTAG IADAAGVGAA VQQPLASFTE WAHLMNNGGI 120 TLHGFLQDGQ HDMSSRTDQQ SYINAPSLMN PSSNNLALQG HHEQDHGPQQ LLSNLGSELL 180 LSPTSPYGIQ SSLLRSLMEP TAAVAKPALP PGFQQHDQYG QQMGQAAAAA RFTQPLQFTN 240 DAAFWNPSAG NKKANGQPAL KKPRLETPSP LPTFKVRKEK LGDRVTALQQ LVAPFGKTDT 300 ASVLHETIEY IKFLHDQVGA LSAPYLKNGH QVPHLKSSSP DKSKDGHGEV SLKGRGLCLV 360 PISSTFAVAS EVPVDFWTPF GANFR

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MGDHAEMLHA APAMYNAAGV AAPHGGWWNT AVSASATCST ELAGFSTWSS ALAASYDMAA  60
EGAKAKSATT TSSGSPGNNS SVTFQEPTAG IADAAGVGAA VQQPLASFTE WAHLMNNGGI  120
TLHGFLQDGQ HDMSSRTDQQ SYINAPSLMN PSSNNLALQG HHEQDHGPQQ LLSNLGSELL  180
LSPTSPYGIQ SSLLRSLMEP TAAVAKPALP PGFQQHDQYG QQMGQAAAAA RFTQPLQFTN  240
DAAFWNPSAG NKKANGQPAL KKPRLETPSP LPTFKVRKEK LGDRVTALQQ LVAPFGKTDT  300
ASVLHETIEY IKFLHDQVGA LSAPYLKNGH QVPHLKSSSP DKSKDGHGEV SLKGRGLCLV  360
PISSTFAVAS EVPVDFWTPF GANFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822972.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A1E5VU63	0.0	A0A1E5VU63_9POAL; Transcription factor bHLH112
STRING	Si010139m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87