PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00978.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 35208.3 Da PI: 9.0829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.4 | 1.9e-42 | 55 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 lppGfrF Pt+eel+++yL+ k++g++ ++++vi+ +d + ++Pw+Lp ++ a+ + w++F++r++++a+g r++ Zmw_sc00978.1.g00120.1.am.mk 55 LPPGFRFYPTEEELLCFYLRSKLDGRRSDIDRVIPVADFCALDPWQLPGtaevhrCACAGGEPWFYFCPRQEREARGGRPS 135 79****************************999***************53666654444889******************* PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+t sg+Wka g+ v++++g+ +g kkt+vfy+grap g+kt+W m+eyr+ Zmw_sc00978.1.g00120.1.am.mk 136 RITPSGFWKAAGTPGWVYASDGRPIGSKKTMVFYRGRAPAGTKTKWKMNEYRA 188 ***************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-48 | 50 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.143 | 55 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-22 | 56 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MQPSLRRRVF HLETGNSSRS TPQNDHHLDA STTRTRSPAH SFTVRRRRPP AMAELPPGFR 60 FYPTEEELLC FYLRSKLDGR RSDIDRVIPV ADFCALDPWQ LPGTAEVHRC ACAGGEPWFY 120 FCPRQEREAR GGRPSRITPS GFWKAAGTPG WVYASDGRPI GSKKTMVFYR GRAPAGTKTK 180 WKMNEYRALE DADAADVAAP PPTHALQTRG EFSLCRLYTK SGYPRQFDRR PRAAAMAGGG 240 SEKPAASSST AALLANVEET GRKRKRSPQN DDTSSSDDGS GGRGDCRQHQ PAPEAGTEER 300 LVDATDEWTE FLDWLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-34 | 44 | 220 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-34 | 44 | 220 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-34 | 44 | 220 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-34 | 44 | 220 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-34 | 44 | 220 | 9 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-34 | 44 | 220 | 6 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-34 | 44 | 220 | 6 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 47 | RSPAHSFTVRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809342.1 | 1e-109 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 4e-61 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D9WH20 | 1e-115 | A0A0D9WH20_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G14390.1 | 1e-115 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Publications ? help Back to Top | |||
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