PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00978.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 316aa MW: 35208.3 Da PI: 9.0829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00978.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.4	1.9e-42	55	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 lppGfrF Pt+eel+++yL+ k++g++ ++++vi+ +d + ++Pw+Lp ++ a+ + w++F++r++++a+g r++ Zmw_sc00978.1.g00120.1.am.mk 55 LPPGFRFYPTEEELLCFYLRSKLDGRRSDIDRVIPVADFCALDPWQLPGtaevhrCACAGGEPWFYFCPRQEREARGGRPS 135 79**************************999***********53666654444889*************** PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+t sg+Wka g+ v++++g+ +g kkt+vfy+grap g+kt+W m+eyr+ Zmw_sc00978.1.g00120.1.am.mk 136 RITPSGFWKAAGTPGWVYASDGRPIGSKKTMVFYRGRAPAGTKTKWKMNEYRA 188 *************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-48	50	220	IPR003441	NAC domain
PROSITE profile	PS51005	47.143	55	220	IPR003441	NAC domain
Pfam	PF02365	3.8E-22	56	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MQPSLRRRVF HLETGNSSRS TPQNDHHLDA STTRTRSPAH SFTVRRRRPP AMAELPPGFR 60 FYPTEEELLC FYLRSKLDGR RSDIDRVIPV ADFCALDPWQ LPGTAEVHRC ACAGGEPWFY 120 FCPRQEREAR GGRPSRITPS GFWKAAGTPG WVYASDGRPI GSKKTMVFYR GRAPAGTKTK 180 WKMNEYRALE DADAADVAAP PPTHALQTRG EFSLCRLYTK SGYPRQFDRR PRAAAMAGGG 240 SEKPAASSST AALLANVEET GRKRKRSPQN DDTSSSDDGS GGRGDCRQHQ PAPEAGTEER 300 LVDATDEWTE FLDWLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-34	44	220	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-34	44	220	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-34	44	220	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-34	44	220	6	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-34	44	220	9	168	NAC domain-containing protein 19
3swm_B	6e-34	44	220	9	168	NAC domain-containing protein 19
3swm_C	6e-34	44	220	9	168	NAC domain-containing protein 19
3swm_D	6e-34	44	220	9	168	NAC domain-containing protein 19
3swp_A	6e-34	44	220	9	168	NAC domain-containing protein 19
3swp_B	6e-34	44	220	9	168	NAC domain-containing protein 19
3swp_C	6e-34	44	220	9	168	NAC domain-containing protein 19
3swp_D	6e-34	44	220	9	168	NAC domain-containing protein 19
4dul_A	4e-34	44	220	6	165	NAC domain-containing protein 19
4dul_B	4e-34	44	220	6	165	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	47	RSPAHSFTVRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809342.1	1e-109	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-61	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9WH20	1e-115	A0A0D9WH20_9ORYZ; Uncharacterized protein
STRING	LPERR05G14390.1	1e-115	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]