PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00972.1.g00280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38488.2 Da PI: 6.8389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.1 | 5.1e-34 | 51 | 142 | 36 | 129 |
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116 ++++y++e ++ + +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfykgrap+g Zmw_sc00972.1.g00280.1.sm.mk 51 QAELYYAEAERCK-IGTEDQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAPNG 129 5566666666665.2234667**************************************.999****************** PP NAM 117 ektdWvmheyrle 129 +k+dW+mheyrle Zmw_sc00972.1.g00280.1.sm.mk 130 QKSDWIMHEYRLE 142 ***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.603 | 6 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-16 | 64 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-37 | 67 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MKTHPALPVF PFRLRESNSI LEETARVQGL AEIGVLTGGA RRPGADARSK QAELYYAEAE 60 RCKIGTEDQN EWYFFSHKDK KYPTGTRTNR ATTAGFWKAT GRDKPIYVKN CLVGMRKTLV 120 FYKGRAPNGQ KSDWIMHEYR LETSENGMPH EEGWVVCRVF RKRLATVHRM PSDAPYWFND 180 HGGFMAPEPS SHHQQNAMVY QRQPSYPCKV ELEYHHLLPQ EHFLQLPQLE SPKLPDLVGS 240 VALQPCSLTQ EHVASRYMEQ ELQAEQVYLT AGHASGSDWR ALDKFVASQL ISNEDANSKE 300 PGSYSNQVQV FNQVEEKEEA LDYVSTSASC GGENDLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
4dul_A | 8e-30 | 69 | 163 | 70 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-30 | 69 | 163 | 70 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448236.1 | 1e-164 | NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 5e-87 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1E5W2H2 | 1e-164 | A0A1E5W2H2_9POAL; NAC domain-containing protein 7 | ||||
STRING | Sb06g023780.1 | 1e-164 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Publications ? help Back to Top | |||
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