PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00972.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 441aa MW: 46749.7 Da PI: 7.7871 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.5 | 1.8e-18 | 361 | 395 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp+g ktLCnaCG+++++ +l Zmw_sc00972.1.g00170.1.am.mk 361 CSHCAVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 395 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-17 | 355 | 409 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.873 | 355 | 391 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.33E-13 | 358 | 418 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 359 | 393 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.35E-14 | 360 | 417 | No hit | No description |
Pfam | PF00320 | 1.6E-16 | 361 | 395 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 361 | 386 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MVHQTLAPST ASASSPFVNA NDAATPAPAP CSSSLPSPRG SAMPSYANHH SLMVRSGAAG 60 LQFVILMRVF WGHKDGTMDA LKSSAFSPEE TAEDAAAANA ALVEREGFSI EDLLDMEVFG 120 EPDMDSADQE DAPPPPATTA EETDEKCSPG KSQPSSIVTY ELPLPPPEMV DLPAHDVEEE 180 LEWVSRVIDD SLSEVPPPPQ PLAMAAAQAA RSPLAHHCLP HDGPYRAVPP APGPLRPLST 240 DVLVPVKAKR SKRSPSSAWY VSGASLFLDS TSSSSTATTS SSSSSSASFP SFLLDSPPFS 300 CPDFEGYPWF LQPRRKKSKH SKGGKQKPKK RGRKPKHAPQ LTGAAAAAAA ASQVTQGDRR 360 CSHCAVQKTP QWRAGPEGAK TLCNACGVRF KSGRLLPEYR PACSPTFVSS IHSNSHRKVL 420 EMRRKKEAGL VATAAPAVAS F |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151060.1 | 1e-128 | uncharacterized protein LOC100284693 | ||||
TrEMBL | B6TWI7 | 1e-127 | B6TWI7_MAIZE; GATA zinc finger family protein | ||||
STRING | Si010126m | 1e-122 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 |