PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00972.1.g00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 441aa    MW: 46749.7 Da    PI: 7.7871
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00972.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18361395135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+C + kTp+WR gp+g ktLCnaCG+++++ +l
  Zmw_sc00972.1.g00170.1.am.mk 361 CSHCAVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 395
                                   *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-17355409IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.873355391IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-13358418No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14359393IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.35E-14360417No hitNo description
PfamPF003201.6E-16361395IPR000679Zinc finger, GATA-type
PROSITE patternPS003440361386IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVHQTLAPST ASASSPFVNA NDAATPAPAP CSSSLPSPRG SAMPSYANHH SLMVRSGAAG  60
LQFVILMRVF WGHKDGTMDA LKSSAFSPEE TAEDAAAANA ALVEREGFSI EDLLDMEVFG  120
EPDMDSADQE DAPPPPATTA EETDEKCSPG KSQPSSIVTY ELPLPPPEMV DLPAHDVEEE  180
LEWVSRVIDD SLSEVPPPPQ PLAMAAAQAA RSPLAHHCLP HDGPYRAVPP APGPLRPLST  240
DVLVPVKAKR SKRSPSSAWY VSGASLFLDS TSSSSTATTS SSSSSSASFP SFLLDSPPFS  300
CPDFEGYPWF LQPRRKKSKH SKGGKQKPKK RGRKPKHAPQ LTGAAAAAAA ASQVTQGDRR  360
CSHCAVQKTP QWRAGPEGAK TLCNACGVRF KSGRLLPEYR PACSPTFVSS IHSNSHRKVL  420
EMRRKKEAGL VATAAPAVAS F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-128uncharacterized protein LOC100284693
TrEMBLB6TWI71e-127B6TWI7_MAIZE; GATA zinc finger family protein
STRINGSi010126m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108