PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00971.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 525aa MW: 56938.2 Da PI: 8.6039

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00971.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	241	270	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 ++rWT+eE+ l+ +v+++G+g W+tI r Zmw_sc00971.1.g00200.1.am.mkhc 241 KQRWTAEEEAALKAGVARHGPGKWRTILRD 270 79*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.84E-9	238	286	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-6	241	269	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-9	241	286	IPR009057	Homeodomain-like
CDD	cd11660	1.15E-12	242	323	No hit	No description
SuperFamily	SSF46785	9.8E-6	388	426	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-6	390	426	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
TGWNEAGVWT RVKRWLGRPR AEYLFRFKGD TIPKIEGTPP PLASPARLLW RTHPNMFAKL 60 SALITHPCKR PCLALDIGTG SGQAAIVFLI SSLFSKNSWR RMDHHHHGGP LAEAAHWFDL 120 PMFNDVTARM RPEVLSVEIQ LRMSPDPVED SDHDGGLPPH HPPPGSSGPN GFLHLIARLG 180 HLALEAEPLV LTEFPSPRPP PDAPWRDPPL ELPADFVPGA GGGGGGGRAE DAQHLAMGAP 240 KQRWTAEEEA ALKAGVARHG PGKWRTILRD PDFGPLLSLR SNVDLKVGPA ARRGSRGGSA 300 GRFCEFAGVG GLAISELDKW RNLSVTAGGY GSREKARMAL KKGRQVPKVP AESMEVDEYH 360 MDNVHNAFLD VQPLAMVVEP LQLGDSPDKS VVRLDEIILE AIKNLKKASG SNKAAIASYI 420 EVNQKYRIAP TSPSLGGKST KLYSMEEMNR KNNVKQLAKP QVDSKLEKMR SMTKEEAAVF 480 AAKAVAEAEV AIAEAEEAAR VAEAAEADAE AAKVFLEAVT MLRAC

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

TGWNEAGVWT RVKRWLGRPR AEYLFRFKGD TIPKIEGTPP PLASPARLLW RTHPNMFAKL  60
SALITHPCKR PCLALDIGTG SGQAAIVFLI SSLFSKNSWR RMDHHHHGGP LAEAAHWFDL  120
PMFNDVTARM RPEVLSVEIQ LRMSPDPVED SDHDGGLPPH HPPPGSSGPN GFLHLIARLG  180
HLALEAEPLV LTEFPSPRPP PDAPWRDPPL ELPADFVPGA GGGGGGGRAE DAQHLAMGAP  240
KQRWTAEEEA ALKAGVARHG PGKWRTILRD PDFGPLLSLR SNVDLKVGPA ARRGSRGGSA  300
GRFCEFAGVG GLAISELDKW RNLSVTAGGY GSREKARMAL KKGRQVPKVP AESMEVDEYH  360
MDNVHNAFLD VQPLAMVVEP LQLGDSPDKS VVRLDEIILE AIKNLKKASG SNKAAIASYI  420
EVNQKYRIAP TSPSLGGKST KLYSMEEMNR KNNVKQLAKP QVDSKLEKMR SMTKEEAAVF  480
AAKAVAEAEV AIAEAEEAAR VAEAAEADAE AAKVFLEAVT MLRAC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818200.1	2e-97	single myb histone 1
TrEMBL	A0A3L6SQP0	1e-102	A0A3L6SQP0_PANMI; Single myb histone 1-like
STRING	Pavir.Ea02064.1.p	8e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1324	38	110