PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00970.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 197aa MW: 21500 Da PI: 9.5822 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa++ Zmw_sc00970.1.g00030.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARWQ 136 67789***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 82.9 | 4.5e-27 | 83 | 136 | 2 | 55 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRAR++ Zmw_sc00970.1.g00030.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARWQ 136 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 62 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-18 | 72 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.8E-15 | 80 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.15E-16 | 81 | 135 | No hit | No description |
Pfam | PF00046 | 2.5E-16 | 83 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGATSPSASR LELTMAVTGL SSSSCSEGLA GWNNGNGSGN SNVRMDLDMN QPASGCEEEE 60 FPMGSVEEDE EERACGGGPH RPKKLRLSKE QSRLLEESFR LNHTLTPKQK EALAVKLKLR 120 PRQVEVWFQN RRARWQGALG IRIETCAASQ TRDNNTHHRG HGSRGRAHRS PRATGCGVPV 180 PPAPALRSVL GRHEKDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819203.1 | 7e-61 | homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 2e-57 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 2e-57 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2T7DJ80 | 5e-60 | A0A2T7DJ80_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01766.1.p | 3e-58 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |