PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00969.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 410aa MW: 43379.7 Da PI: 5.7626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00969.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	155	199	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr l+P+ +K++Ka+i Av Y+k+Lq Zmw_sc00969.1.g00210.1.am.mk 155 IVSERKRRVRMKERLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 199 568*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.99E-13	146	199	No hit	No description
SuperFamily	SSF47459	3.4E-15	146	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.269	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	151	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-7	155	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-11	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MLIGRVSPFL LCSLASGPPP PPPNSSAMEH DLLQLLHLPA QDHLLLSSGF FGVATGGGGA 60 AVHTPCGDAA GLDDCGWMED LMHLGDELFA GDDDTAAGPG VDHQLLSMCG SWSPEGPPAP 120 SVSLELDGAE GSPPSVEQDD ASAATRKRRD RSKTIVSERK RRVRMKERLY ELRALVPNIT 180 KMDKASIIAD AVVYVKNLQS RATKLKEEVA TLEATPRPAA ARHQQQQQHP KQHAAADRRQ 240 QSRGGRLPAP DGDDNDDGSA GPAGARVMNV DVTQVGDGRF YVTVECERRD GVAAPLYSAV 300 ESLACFRVES SSFGRSGHDR VVSTHILKGS DQVGNATVGE GTVNLWMMAA LLKEGFQPEA 360 TAPIPDCPKA PPQLPPPPAP TPASCVPPQG LPTADAQHEK RTRNPVGVDG

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MLIGRVSPFL LCSLASGPPP PPPNSSAMEH DLLQLLHLPA QDHLLLSSGF FGVATGGGGA  60
AVHTPCGDAA GLDDCGWMED LMHLGDELFA GDDDTAAGPG VDHQLLSMCG SWSPEGPPAP  120
SVSLELDGAE GSPPSVEQDD ASAATRKRRD RSKTIVSERK RRVRMKERLY ELRALVPNIT  180
KMDKASIIAD AVVYVKNLQS RATKLKEEVA TLEATPRPAA ARHQQQQQHP KQHAAADRRQ  240
QSRGGRLPAP DGDDNDDGSA GPAGARVMNV DVTQVGDGRF YVTVECERRD GVAAPLYSAV  300
ESLACFRVES SSFGRSGHDR VVSTHILKGS DQVGNATVGE GTVNLWMMAA LLKEGFQPEA  360
TAPIPDCPKA PPQLPPPPAP TPASCVPPQG LPTADAQHEK RTRNPVGVDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	161	KRRDRSKTIVSERKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825747.1	1e-110	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBL	A0A2T7CTZ1	1e-110	A0A2T7CTZ1_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PRK6	1e-110	A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRING	Pavir.J29678.1.p	1e-111	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5546	30	57