PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00968.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 434aa MW: 44202.7 Da PI: 7.3051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00968.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	217	260	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ +++L + lP + +K +Ka+i+++A +YIk L+ Zmw_sc00968.1.g00170.1.sm.mk 217 TERDRRKKMRTLYSTLHSFLPRL----PEKADKATIVKEAADYIKTLE 260 6*******************6....39**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.148	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-13	212	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.87E-10	214	260	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-12	214	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-6	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	217	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MSQQGANLSQ DVEGSLPGGA GSEGTAGSGS SSAKQAVEII SSGWKPASPV INLPQEVQGT 60 HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASPLEVQ AGDKTAGSKL 120 PSPVVGLVAH AGEPARPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV 180 QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP 240 EKADKATIVK EAADYIKTLE GTVHMLEKLK LERLKVAQLL GAGSKSSRRA AAPPPPMRHG 300 GGAAPAPAPA NMGTISWNVP QATAAPPPPP PPQVRPLQTW SLPNITVSVA GNEAFFALSA 360 PRQQAAVSKA LFVLDKFCID VLTLHVSSDQ TRCSLTIHTC LNAAAGNVAL ELMTAETRYE 420 LAASELARWI NNAQ

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MSQQGANLSQ DVEGSLPGGA GSEGTAGSGS SSAKQAVEII SSGWKPASPV INLPQEVQGT  60
HVGDASPGEA TPEAVVLAGT AGFNSSFSSV KLAAEDGGGG SKPASPLEVQ AGDKTAGSKL  120
PSPVVGLVAH AGEPARPAAV VGAGGSDKGK EKDEPAAEEG AGDIAGSSSK SIKSSSDGDV  180
QGDAKDAPAP AAGGDGSGKR KGKGVAAEAD HALHMWTERD RRKKMRTLYS TLHSFLPRLP  240
EKADKATIVK EAADYIKTLE GTVHMLEKLK LERLKVAQLL GAGSKSSRRA AAPPPPMRHG  300
GGAAPAPAPA NMGTISWNVP QATAAPPPPP PPQVRPLQTW SLPNITVSVA GNEAFFALSA  360
PRQQAAVSKA LFVLDKFCID VLTLHVSSDQ TRCSLTIHTC LNAAAGNVAL ELMTAETRYE  420
LAASELARWI NNAQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91