PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00967.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 704aa    MW: 76105.1 Da    PI: 10.1417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00967.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS22.61.1e-0730538721103
                          GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                                   ++lL++++++asp+gd +qRla++f+e ++ar+ +  ++ y   ++ +t  +  s  +  l++f   sP+  +  ++  ++
  Zmw_sc00967.1.g00060.1.am.mk 305 TELLKQIKQHASPQGDGTQRLAHCFAEDMNARVGDWHTKKYGEGSSISTLGDVYSLGILLLEMFTGRSPTDDMFRVISTST 385
                                   579******************************994444444444433333445555555566666666666666666666 PP

                          GRAS 102 Il 103
                                   I+
  Zmw_sc00967.1.g00060.1.am.mk 386 IV 387
                                   65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520585.89E-3287283IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-3987284IPR032675Leucine-rich repeat domain, L domain-like
PfamPF035143.9E-5305387IPR005202Transcription factor GRAS
Gene3DG3DSA:1.10.510.105.5E-5348389No hitNo description
SuperFamilySSF561121.96E-5350379IPR011009Protein kinase-like domain
Gene3DG3DSA:3.80.10.101.4E-56391646IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082631.7E-9391433IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520585.17E-46396646IPR032675Leucine-rich repeat domain, L domain-like
PfamPF005600.7464484IPR001611Leucine-rich repeat
PfamPF138559.3E-7547606IPR001611Leucine-rich repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MFEDSLDIHK FAEVALPSRA VEIAEPMIGR GVSCSKPKPR VRMPMRYGVV GMRAIRDAHL  60
MAGWKSGREE KPSGACCRRS VQITAPYLGS NRLSGAIPAS LGRLPRLANL NLSSCSSLTT  120
MEFQSNQLHG RLPPELGYKL TRLRTLKLWK NNLTGAIPAS LGNLSSLSYV SLAFNRFEGT  180
VPPGLGGIPG RRHLDLAYND LSGELPHSLY NSSSMEAFQF TGSIPESLSN LAALKLLDLA  240
GNMLTGYVDK PMRIQRKIRW ADSASFGKLK DLTALALSKN RPNGRGRQEQ QAERGAVGGR  300
CHPGTELLKQ IKQHASPQGD GTQRLAHCFA EDMNARVGDW HTKKYGEGSS ISTLGDVYSL  360
GILLLEMFTG RSPTDDMFRV ISTSTIVNAE ADDEAALLSF KAAAISNNYD DPLASWNRSS  420
GAGGFCRWEG VTCGARHGRV VALSLPFHGL AGVLSPAIGS LSFLVTLNLS NNRLSGDIPA  480
SLGRLHRLRS LNLSSNALSG ELPARGPGTP IQPASEIGNR MKRLKVIILW ENNFTGTIPP  540
SLANLSSLRN FAVGFNKLEG SIPPVFDGIL GLQNLDLAYN HLSAQLPRSL YNLSSLKTLQ  600
IQGNKLHGGI PGDIGSRFPS LNILILGENQ FTGSIPDSVS NLSALQPRRC PRRGHGECLV  660
SYPRIRRTGR PATYPEALKM PAEVEFHEKS LPGWLGGRDG AEVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mna_A4e-37736789621LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682123.12e-79probable LRR receptor-like serine/threonine-protein kinase At3g47570
STRINGGRMZM2G463580_P018e-82(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1967222