PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00963.1.g00370.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 536aa    MW: 58476.7 Da    PI: 4.9485
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00963.1.g00370.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06134175540
                        zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                                      C+ +++++   +C+++   lC +C    H+       Ht++
  Zmw_sc00963.1.g00370.1.sm.mkhc 134 LCDFCGKQRSMVYCRSDAASLCLSCDRDVHSAnalsqrHTRT 175
                                     7*****************************657888888876 PP
2zf-B_box26.11.8e-08177218540
                        zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                                      C++++++++   C +++  lC++C   +H        H+++
  Zmw_sc00963.1.g00370.1.sm.mkhc 177 LCDRCSSQPAAVRCLEDNASLCQNCDWVGHDAasgasgHKRQ 218
                                     7*****************************446777778875 PP
3CCT61.72.4e-21480523144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  Zmw_sc00963.1.g00370.1.sm.mkhc 480 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 523
                                     899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-12130177IPR000315B-box-type zinc finger
PROSITE profilePS501199.869130177IPR000315B-box-type zinc finger
CDDcd000214.26E-7133177No hitNo description
PROSITE profilePS501199.527173220IPR000315B-box-type zinc finger
CDDcd000211.98E-6177220No hitNo description
PfamPF006431.2E-5177218IPR000315B-box-type zinc finger
SMARTSM003360.033178220IPR000315B-box-type zinc finger
PfamPF062031.1E-16480522IPR010402CCT domain
PROSITE profilePS5101715.428480522IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAADRMSAYP RRGICEPVAG HDCASVLGLL PDGLGRAWRQ DKLAKLSETW IHNDCCAVEL  60
LACSAPVDPS SGEAAAPYSN YKFPVWSLIF MSTCKYHIGL LSSIVEERKA RSPLSSTEQL  120
VEFPKILAWI MAVLCDFCGK QRSMVYCRSD AASLCLSCDR DVHSANALSQ RHTRTLLCDR  180
CSSQPAAVRC LEDNASLCQN CDWVGHDAAS GASGHKRQAI NCYSGCPSSA ELSRIWSFVM  240
DIPTVAAEPD CEDGISMMNI DDSGVSNHCV TMDDSRLLEI ANTTLMSDPP SGANLKPLIG  300
SSSGDETNTL LLATDQSTGP VPVMPKIPDA TINDKFNDGS IYEDLCVDDA DLTFENYEEL  360
FGTSHIQAEQ LFDDAGIDSY FEMEEMLPAD SNEEHKYMQL ECSNMVSADS AMSNPGAKAD  420
STLCIPVRQV KSSLSHSFSG LTGESSAGDH QDCGVSPTLN MGEPPWRLPG PDGSCGGGSR  480
DSALSRYKEK KKRRKFDKKI RYASRKARAD TRRRVKGRFI KAGEAYDYDP LSPRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489493KKKRR
2489494KKKRRK
3490494KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-117COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3L6QCT50.0A0A3L6QCT5_PANMI; Zinc finger protein CONSTANS-LIKE 9
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788