PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00961.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 462aa MW: 51591.5 Da PI: 10.1417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00961.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.3	4.8e-17	48	93	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +K+++L +A++Y+ksLq Zmw_sc00961.1.g00170.1.am.mk 48 HNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 93 9***********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.03E-17	41	97	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.4E-19	41	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.482	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-20	46	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-14	48	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-18	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MDLEGEGTLV EVRRRDEEQG EVHQELMEEV RAPRTPPPTR RSRSVEFHNF SERRRRDRIN 60 EKLKALQELL PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP PELQQYMHYM 120 TADPAQMPPP PLRPSQQPRP FQITQADPQR QSNVESDFLS QMQNLNPSEP PQNFLRPPKL 180 QLYTPPWADS PCRHQRASEC ALRRAVRSPE RQSFELRQLP TRPRQSVPMQ LQPPELAEPA 240 HAAAQAAAEA VIRKGTASGV PRKVTGAGND VSPDDGWIRR DALLERQQRL ELHGHGRVVR 300 YRFRLRLQEQ CQYSYHGNGW KGWSVPSVHE ECHFIDVRLS KVRLTRNCGG KDTGQLLRPV 360 TPTGRPTCRS TGTSGGLAAW RLQAARALRV LTSTCLPRAI SAAHVHHSVG RLSSSGPGDS 420 GDGSKRPAGV RTRPDLCPAS PSSVPPSLAT GIPPSPSPSG DW

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MDLEGEGTLV EVRRRDEEQG EVHQELMEEV RAPRTPPPTR RSRSVEFHNF SERRRRDRIN  60
EKLKALQELL PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP PELQQYMHYM  120
TADPAQMPPP PLRPSQQPRP FQITQADPQR QSNVESDFLS QMQNLNPSEP PQNFLRPPKL  180
QLYTPPWADS PCRHQRASEC ALRRAVRSPE RQSFELRQLP TRPRQSVPMQ LQPPELAEPA  240
HAAAQAAAEA VIRKGTASGV PRKVTGAGND VSPDDGWIRR DALLERQQRL ELHGHGRVVR  300
YRFRLRLQEQ CQYSYHGNGW KGWSVPSVHE ECHFIDVRLS KVRLTRNCGG KDTGQLLRPV  360
TPTGRPTCRS TGTSGGLAAW RLQAARALRV LTSTCLPRAI SAAHVHHSVG RLSSSGPGDS  420
GDGSKRPAGV RTRPDLCPAS PSSVPPSLAT GIPPSPSPSG DW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	56	ERRRRD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9562	30	43