PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00956.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 276aa    MW: 31178.7 Da    PI: 10.1337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00956.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-141992712297
                                     H.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                              B3  22 faeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                                     +a+e+     + ++t ++ ++ g++W+ ++ + +++++ +l +GW +F+++ngL+++D+++++l+++ ++ +++v+++
  Zmw_sc00956.1.g00120.1.sm.mkhc 199 YAAEYlP---AVGQT-VVLQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLRVRDVCLLELMENeRNITMNVHII 271
                                     5555531...22334.45677*********77777766.6999**********************9878888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.0E-5185274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-17194271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15194271IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-13195271No hitNo description
PfamPF023629.9E-13198272IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814211274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVKNEYLNKL LSSKVDTSQK KHFKRKPDME PMDNCSYKRR QIAINISNSK SLQSCETIGS  60
KTAKGNNGGI EGSPNKWKDP QPLRNPFKSI VMKRKKVVLG SKKVETSTST ADYEKPVHEK  120
CGNTSGGMMN MCANMSSQNM VWTDRFYHGG KTIRMATSTA LEESATHATD GDGFLRAGPY  180
PSESIAKMAS EVHEIGVRYA AEYLPAVGQT VVLQRMGKTW NTQMVIHNGR RWFLNGGWTK  240
FARDNGLRVR DVCLLELMEN ERNITMNVHI IFREEF