PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00950.1.g00390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 406aa MW: 44164.2 Da PI: 4.7767 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.7 | 8.5e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ +C+++ lC +C + H+ Ht++ Zmw_sc00950.1.g00390.1.am.mkhc 4 LCDFCGKQRSMVYCRSDAASLCLSCDRNVHSAnalsqrHTRT 45 7*****************************667888888876 PP | |||||||
2 | zf-B_box | 26.9 | 9.8e-09 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C++++++++ C +++ lC++C +H H+++ Zmw_sc00950.1.g00390.1.am.mkhc 47 LCDRCSSQPAAVRCLEDNASLCQNCDWGGHDAasgasgHKRQ 88 7*****************************446777788876 PP | |||||||
3 | CCT | 62.2 | 1.7e-21 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ Zmw_sc00950.1.g00390.1.am.mkhc 350 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 393 899*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.196 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.01E-7 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.385 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-6 | 47 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.20E-6 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.038 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.6E-17 | 350 | 392 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.428 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MAVLCDFCGK QRSMVYCRSD AASLCLSCDR NVHSANALSQ RHTRTLLCDR CSSQPAAVRC 60 LEDNASLCQN CDWGGHDAAS GASGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPD 120 CEDGISMMNI DDSGVSNHCV TMDDSRLLEI ANTTLMSDPP SGANLKPLIG SSSGDETNTL 180 LLATDQPTGP VPVMPKIPDA TVNDKFNDGS IYEDLCVDDA DLTFENYEEL FGTSHIQAEQ 240 LFDDAGIDSY FEMEEMLPAD SNEEHKYMQL ECSNMVSADS AMSNPGAKAD STLCIPVRQV 300 KSSLSHSFSG LTGESSAGDH QDCGVSPTLN MGEPPWRLPG PDGSCGGGSR DSALSRYKEK 360 KKRRKFDKKI RYASRKARAD TRRRVKGRFI KAGEAYDYDP LSPRSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 363 | KKKRR |
2 | 359 | 364 | KKKRRK |
3 | 360 | 364 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827948.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-119 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2S3GT85 | 0.0 | A0A2S3GT85_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FBG3 | 0.0 | A0A2T7FBG3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QCT5 | 0.0 | A0A3L6QCT5_PANMI; Zinc finger protein CONSTANS-LIKE 9 | ||||
STRING | Si017374m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |