PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00950.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 334aa MW: 36718 Da PI: 4.2838

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00950.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.5e-20	75	128	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klg++ rqV vWFqNrRa++k Zmw_sc00950.1.g00170.1.am.mkhc 75 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGMQPRQVAVWFQNRRARWK 128 5678*************************************************9 PP
2	HD-ZIP_I/II	131	4.5e-42	74	165	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+Lg+qprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal+++++ Zmw_sc00950.1.g00170.1.am.mkhc 74 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGMQPRQVAVWFQNRRARWKTKQLEQDFDRLKASFDALRADHDV 152 69*************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreelk 92 L +++++Lr+++ Zmw_sc00950.1.g00170.1.am.mkhc 153 LLQDNHRLRSQVV 165 *******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.22E-20	68	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.912	70	130	IPR001356	Homeobox domain
SMART	SM00389	1.9E-20	73	134	IPR001356	Homeobox domain
CDD	cd00086	1.66E-19	75	131	No hit	No description
Pfam	PF00046	1.4E-17	75	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-22	76	137	IPR009057	Homeodomain-like
PRINTS	PR00031	4.5E-6	101	110	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.5E-6	110	126	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.2E-16	130	172	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDPGRLVFNT TGSGAGQMLF LDCGVGGPAG GMFHRGGRPV FAGGLEDGRG VKRPFFTSPD 60 ELLEEEYYDE QLPEKKRRLT PEQVHLLERS FEEENKLEPE RKTELARKLG MQPRQVAVWF 120 QNRRARWKTK QLEQDFDRLK ASFDALRADH DVLLQDNHRL RSQVVSLTKK LQEKEDAESG 180 ASAAADAAEI TTDAKQDSLA LDAQETAAEV AFDAQQVKSE DRLSTGSDES AVGDTDALLG 240 AGGGLGTVDS SVESYFPGGD DHYNDCGMEP VDHCAAEFQS EEDDGAGSDE GCSYYADETA 300 AAVAFFVGAH AHHQVHHVDD DEDDGQISSW WMWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	130	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813024.1	1e-146	homeobox-leucine zipper protein HOX16-like isoform X1
Swissprot	Q6YWR4	1e-133	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A2T7FC04	1e-146	A0A2T7FC04_9POAL; Uncharacterized protein
STRING	Pavir.Aa00462.1.p	1e-146	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]