PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00947.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 448aa MW: 48268.6 Da PI: 9.6003 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.7 | 2.4e-49 | 100 | 225 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y ++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy Zmw_sc00947.1.g00010.1.am.mk 100 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYCFDPWELPARAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 179 79***************************.99***************8777899*************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zmw_sc00947.1.g00010.1.am.mk 180 WKATGADRMIRGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 225 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.066 | 99 | 249 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-57 | 99 | 249 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 101 | 225 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MRTRPLTARP GARQPRCPSA PPTRPGTWLA LSPSGSFWAA WRVTARAALQ LRQGRLGRVC 60 RDLDDWHYGA AGGADAGSSG ASMGGGGEAA GDSHDNDLVM PGFRFHPTEE ELIEFYLRRK 120 VEGRRFNVDL IADLDLYCFD PWELPARAVM GGKEWFFYVP RDRKYRNGDR PNRVTASGYW 180 KATGADRMIR GENNRPIGLK KTLVFYSGKA PKGVRSSWIM NEYRLPPPAA DAEPLTHKSE 240 ISLCRVYKRS GIDDGRGQPS SSSTQASAGR RTRSGRHMST SSASSPLSPI PSSFHLLQGE 300 CPSASPPAIM DQMMITADNV SQLVLPPTAR AFAPPGNSLA AVAPAEGATI LASTDSLLNM 360 AAVPMGISGP VDKLGTVVGD SQAYANHISA ATGSDFLPLP STQPMSQVAP LGALPMTAPL 420 SSVDDKLGWD WNPVPDTTTR DYRTSIFK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-54 | 101 | 250 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-54 | 101 | 250 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-54 | 101 | 250 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-54 | 101 | 250 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 101 | 250 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-54 | 101 | 250 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-54 | 101 | 250 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962060.1 | 1e-155 | NAC domain-containing protein 35 | ||||
TrEMBL | K3Z6L9 | 1e-154 | K3Z6L9_SETIT; Uncharacterized protein | ||||
STRING | Si022103m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |