PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00946.1.g00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 361aa MW: 38536.2 Da PI: 8.5987 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5e-32 | 235 | 290 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc00946.1.g00250.1.am.mkhc 235 KSRRCWSPELHRQFVAALNQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 290 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.764 | 232 | 292 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-17 | 233 | 293 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 233 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.9E-26 | 235 | 290 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-7 | 237 | 288 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGLDVGEIGM GADLSLDLRH FAARAMRQSK NAPPASDMDA YIRRLEEERG KIEVFRRELP 60 ICARLLADVI DVMKEEAEKK KRNDRKEDEA GDKSKWMSTA QLWTGGSGSD AAETEKQDKG 120 TSSSSSEPKS CGGAFTPFKA VGSGAPAFGR PCLRNDDKAA GVGTPPDLSP LSPPAVKSVP 180 AGAADKSNCQ VLGFAQAAAR AAAMVPSGPA LSGLQRQPQQ TTPPPQQQQQ QQARKSRRCW 240 SPELHRQFVA ALNQLGGPQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH NRRTPAGSTV 300 VSQPIVLVGG LWIPQEQSSS QSGSPQGPLH FSTSAGVAVS STAATASCEE EDGRSESDGW 360 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-14 | 235 | 288 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459272.2 | 1e-156 | transcription factor HHO2 | ||||
TrEMBL | A0A0C4MLG7 | 0.0 | A0A0C4MLG7_9POAL; Uncharacterized protein | ||||
STRING | Sb02g001600.1 | 1e-156 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |