PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00946.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19774.8 Da PI: 10.1543 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.9 | 1.1e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++ Zmw_sc00946.1.g00140.1.sm.mk 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 60.1 | 9.3e-21 | 74 | 123 | 36 | 85 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++ l e+ + lqk + Zmw_sc00946.1.g00140.1.sm.mk 74 EHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKERSLQEENKALQKEVR 123 59********************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.095 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.80E-39 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-31 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.746 | 52 | 162 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.1E-16 | 73 | 124 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSP KGKLYEYATD 60 SRSLAVSGFA ARVEHLMGED LESLNLKELQ QLEQQLESSL KHIRSRKERS LQEENKALQK 120 EVRFLTGSLL AFYPPVTVGE RGEEVVAAAA ALQAQGQAQA QLRVGNLPPW MLSHLNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-20 | 1 | 88 | 1 | 92 | MEF2C |
5f28_B | 4e-20 | 1 | 88 | 1 | 92 | MEF2C |
5f28_C | 4e-20 | 1 | 88 | 1 | 92 | MEF2C |
5f28_D | 4e-20 | 1 | 88 | 1 | 92 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105333.2 | 3e-64 | zea apetala homolog 1 | ||||
Swissprot | Q6Q9I2 | 2e-57 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | B6TDJ6 | 2e-69 | B6TDJ6_MAIZE; MADS-box transcription factor 15 | ||||
STRING | OB07G10630.1 | 3e-57 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |