PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00941.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 483aa MW: 50932.3 Da PI: 9.2726

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00941.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.1	4.9e-18	387	421	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C +t+Tp+WR+gp+g+ tLCnaCGl+y +k++ Zmw_sc00941.1.g00010.1.am.mk 387 CTHCSATETPQWREGPSGPGTLCNACGLHYNSKHR 421 ******************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.5E-17	381	432	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.046	381	416	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.7E-15	383	444	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.6E-14	385	420	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	9.07E-18	386	443	No hit	No description
PROSITE pattern	PS00344	0	387	412	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.7E-16	387	421	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MTSRCRRGDR ARAGQGDPIS RRRGSGSRRP LAFVRVEYIQ PRRTKKKKNP KPGLHARCGD 60 EENLAWFSGG NMLSPFRAGG NGGGDDIFAG LDDILPGGDL SCPDDRLDYV IKALEGLDDV 120 FLEELQKGGG PPPPRPIADG EQKGALAAET APGDVPEVPK EDNVGRFGGG AFSNTSCHAA 180 STSAPPTASG PADPCGTLGG VPDAGFVPPL PAHNAPNRAA APYVAPPWSA QRDPYGVIPE 240 PAPPFPANGG LLGSVVAPYL DPQPRSVHHT PSGAIPDTAP KLPVHDAVPP ATARASPSSG 300 CALPTTGETE PAPLLVSFSP LVADWVVPRK KRQLVTRRNP TWLPKPELYE APPAAPPAAP 360 SRRLEAGGSG NLPVVRRRRN RQRNRTCTHC SATETPQWRE GPSGPGTLCN ACGLHYNSKH 420 RLLETYRPTK SPGFDSGKHS NRQNKAAKIM EKKAAAELMR LTADTASAPP IGDEFVDVST 480 STG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MTSRCRRGDR ARAGQGDPIS RRRGSGSRRP LAFVRVEYIQ PRRTKKKKNP KPGLHARCGD  60
EENLAWFSGG NMLSPFRAGG NGGGDDIFAG LDDILPGGDL SCPDDRLDYV IKALEGLDDV  120
FLEELQKGGG PPPPRPIADG EQKGALAAET APGDVPEVPK EDNVGRFGGG AFSNTSCHAA  180
STSAPPTASG PADPCGTLGG VPDAGFVPPL PAHNAPNRAA APYVAPPWSA QRDPYGVIPE  240
PAPPFPANGG LLGSVVAPYL DPQPRSVHHT PSGAIPDTAP KLPVHDAVPP ATARASPSSG  300
CALPTTGETE PAPLLVSFSP LVADWVVPRK KRQLVTRRNP TWLPKPELYE APPAAPPAAP  360
SRRLEAGGSG NLPVVRRRRN RQRNRTCTHC SATETPQWRE GPSGPGTLCN ACGLHYNSKH  420
RLLETYRPTK SPGFDSGKHS NRQNKAAKIM EKKAAAELMR LTADTASAPP IGDEFVDVST  480
STG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	47	RRTKKKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34358	3	4