PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00939.1.g00190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 412aa MW: 42947.2 Da PI: 6.7802 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.4 | 4e-18 | 316 | 350 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C +t+Tp+WR+gp+g+ tLCnaCGl+y +k++ Zmw_sc00939.1.g00190.1.sm.mk 316 CTHCSATETPQWREGPSGPGTLCNACGLHYNSKHR 350 ******************************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.5E-17 | 310 | 361 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.046 | 310 | 345 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.61E-15 | 312 | 373 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-14 | 314 | 349 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.12E-18 | 315 | 372 | No hit | No description |
Pfam | PF00320 | 7.9E-16 | 316 | 350 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 316 | 341 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence Send to blast |
MLSPFRAGGN GGGDDIFAGL DDILPGGDLS CPDDRLDYVI KALEGLNDVF LEELQKGGGP 60 PPPRPVADGE QKGALAAETA PGDVPEVPKE DNVGRFGGGA FSNTSCHAAS TSAPPTASGP 120 ADQCGALGGV PDAGFVPPLP AHDAPNRAAA PYVAPLWSAQ RDPYGVIPEP APPFPATDGL 180 LGSVVAPYLD PQPRSVHHTP SGAIPDTAPK LPVHDAVPPA TARASPSSGC ALPTTGETEP 240 APLLVSFSPL VADWVVPRKK RQLVTRRNPT WLPKPELYEA PPAAPPAAPS RRLEAGGSGN 300 LPVVRRRRNR QRNRTCTHCS ATETPQWREG PSGPGTLCNA CGLHYNSKHR LLETYRPTKS 360 PGFDSGKHSN RQNKAAKIME KKAAAELMRL TADTASAPPI GDEFVDVSTS TG |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP34358 | 3 | 4 |