PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00939.1.g00190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 412aa    MW: 42947.2 Da    PI: 6.7802
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00939.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18316350135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C +t+Tp+WR+gp+g+ tLCnaCGl+y +k++
  Zmw_sc00939.1.g00190.1.sm.mk 316 CTHCSATETPQWREGPSGPGTLCNACGLHYNSKHR 350
                                   ******************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.5E-17310361IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.046310345IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.61E-15312373No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14314349IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-18315372No hitNo description
PfamPF003207.9E-16316350IPR000679Zinc finger, GATA-type
PROSITE patternPS003440316341IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLSPFRAGGN GGGDDIFAGL DDILPGGDLS CPDDRLDYVI KALEGLNDVF LEELQKGGGP  60
PPPRPVADGE QKGALAAETA PGDVPEVPKE DNVGRFGGGA FSNTSCHAAS TSAPPTASGP  120
ADQCGALGGV PDAGFVPPLP AHDAPNRAAA PYVAPLWSAQ RDPYGVIPEP APPFPATDGL  180
LGSVVAPYLD PQPRSVHHTP SGAIPDTAPK LPVHDAVPPA TARASPSSGC ALPTTGETEP  240
APLLVSFSPL VADWVVPRKK RQLVTRRNPT WLPKPELYEA PPAAPPAAPS RRLEAGGSGN  300
LPVVRRRRNR QRNRTCTHCS ATETPQWREG PSGPGTLCNA CGLHYNSKHR LLETYRPTKS  360
PGFDSGKHSN RQNKAAKIME KKAAAELMRL TADTASAPPI GDEFVDVSTS TG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3435834