PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00939.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 364aa    MW: 39124.4 Da    PI: 8.8022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00939.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-18295325131
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 
                                   Cs+C t kTp+WR gpdg+ tLCnaCGl+y+
  Zmw_sc00939.1.g00180.1.am.mk 295 CSHCATLKTPQWRTGPDGPATLCNACGLRYK 325
                                   ******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.7E-4238262IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.669239262IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-13287326No hitNo description
SMARTSM004011.9E-13289346IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.796289325IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-14293326IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-12294325No hitNo description
PfamPF003203.3E-16295325IPR000679Zinc finger, GATA-type
PROSITE patternPS003440295320IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLRFRTTKPK VAIQSSRNRT QVWHILEEWG GSSDREPGIS WSSSHYDREA GYWRDFAPPL  60
YIGHQKTKRS RHDNSLDYVM KGLEDGSLDD PRKGDGEQKG ALTTEPAPGD ALEVPKEDND  120
VGGLGGGALS NTSCHAAPTP APPKAASSSS PSSPPNLLFC FFFLLPTLRC TKEKASTSHP  180
QERGRQHALP AEARALRGAA APAAPPAAPG SLETPPADPS SLEAGGSGTR PVERSRRNRQ  240
RNRTCSRCTT METPQWREDT AGVAPGPQLS SLEADGSGKP PVALRRRNRQ RNKTCSHCAT  300
LKTPQWRTGP DGPATLCNAC GLRYKPRDHG EGGGEPMKVT ADTATASPVG DEFKDVSTDT  360
STDK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4466122