PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00938.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 461aa MW: 49745.5 Da PI: 9.9108 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.6 | 2.6e-49 | 113 | 238 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kveg+++++ + i+++d+y ++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgy Zmw_sc00938.1.g00040.1.am.mk 113 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-DLIADLDLYCFDPWELPARAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGY 192 79***************************.99***************8777899*************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Zmw_sc00938.1.g00040.1.am.mk 193 WKATGADRMIRGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 238 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.066 | 112 | 262 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-57 | 112 | 262 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 114 | 238 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 461 aa Download sequence Send to blast |
MRTRPPTARP GARQPRCPSA PPARPGIWLA LSPSGSFRAA WRMTARAALQ LRQGRLGRVS 60 RCLRAACARY AMSRDLDDWH YGAAGGAAAG SSGESMGGGG EAAGDSHDND LVMPGFRFHP 120 TEEELIEFYL RRKVEGRRFN VDLIADLDLY CFDPWELPAR AVMGGKEWFF YVPRDRKYRN 180 GDRPNRVTAS GYWKATGADR MIRGENNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP 240 PAADAEPLTH KSEISLCRVY KRSGIDDGRG QPSSSSTQAS AGRRTRAGRH MSTSPASLPL 300 SPIPSSFHLL QGECPSASRP AIIDQMMITA DNVSQLVLPP TARAFAPPGN SLAAVAPAEG 360 ATILASTDSL LNMAAVPTGI SGPVDKLGTV VGDSQAYANH LSAATGSDFL PLPSTQPMPQ 420 VAPLGALPMA APLSSVDDKL SWDWNPVPDT TTRDYRTCIF K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 114 | 263 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 114 | 263 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 114 | 263 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 114 | 263 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962060.1 | 1e-155 | NAC domain-containing protein 35 | ||||
TrEMBL | K3Z6L9 | 1e-153 | K3Z6L9_SETIT; Uncharacterized protein | ||||
STRING | Si022103m | 1e-153 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |