PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00929.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 161aa MW: 17650.7 Da PI: 4.4788 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 48.2 | 2.6e-15 | 35 | 128 | 6 | 92 |
NF-YB 6 rflPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfe 77 ++lP a v r++k l a+ + +da e + fi ++++ a+d c++ kr+tin+dd+l al ++ f Zmw_sc00929.1.g00110.1.sm.mkhc 35 EELPKAIVRRLVKDKLAhiaggegAEVIVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFS 113 6799999999999988622222112345789************************************************ PP NF-YB 78 dyveplkvylkkyre 92 ++veplk+ l+ r Zmw_sc00929.1.g00110.1.sm.mkhc 114 EFVEPLKTSLQDKRS 128 *********998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.0E-31 | 31 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-9 | 36 | 107 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.51E-25 | 37 | 149 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MADEATNESE PQPQAAGTQD KPAPAAAPMT EAEVEELPKA IVRRLVKDKL AHIAGGEGAE 60 VIVNRDAMAA FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFSEFVEPLK 120 TSLQDKRSEA SKKQKEKRRK LNEEALPEKG NDPVDDAENG D |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801207.1 | 3e-78 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0A9GDS4 | 8e-79 | A0A0A9GDS4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Bb01701.1.p | 9e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |