PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00927.1.g00380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 149aa MW: 15722.8 Da PI: 10.7286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L rH +H Zmw_sc00927.1.g00380.1.sm.mk 42 FECKTCSRRFPSFQALGRHRASH 64 89*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.09E-8 | 40 | 108 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.926 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.037 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.8E-10 | 85 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.725 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.1 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MERLTFGQEE PEASIVSVAQ EVMLLLARAG GGGEPSAAPR VFECKTCSRR FPSFQALGRH 60 RASHKRPRPQ GTAAARTAEP AKARAHGCTV CGVEFSLGQA LGGHMRRHRA VAVEGASARG 120 LPEGEAERKA DQAQGSRKLG PKPCSTPSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 67 | RHRASHKRPR |
2 | 64 | 68 | KRPRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795407.1 | 4e-53 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2T7BZ26 | 9e-53 | A0A2T7BZ26_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00294.1.p | 1e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |