PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00918.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 1029aa    MW: 111947 Da    PI: 6.5384
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00918.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2074129156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Zmw_sc00918.1.g00100.1.am.mk  74 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 129
                                   688999***********************************************998 PP
2START117.51.9e-3734852643205
                                   SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEE CS
                         START  43 dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg........galqlmvaelqalsplvp.Rdfv 110
                                    ++e +r+s+vv+m++ +lv  +l+ + +W e ++    ka +++vis g        g l lm+a+lq++splvp R++v
  Zmw_sc00918.1.g00100.1.am.mk 348 TRTEGSRDSAVVIMNSITLVDAFLNAN-KWMELFPsivsKARIIQVISHGaasgnmgsGSLLLMQADLQFPSPLVPiREVV 427
                                   57899**********************.**********9****************************************** PP

                                   EEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHH CS
                         START 111 fvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvks 187
                                   f Ry+   + +g+w ivd  v+  +      ssvv++ ++pSg++i++++ng+s+v+wveh++  g     h +++  v  
  Zmw_sc00918.1.g00100.1.am.mk 428 FFRYCVHnSDEGTWSIVDFPVEGFDLEVLqASSVVKSLRRPSGCMIQDMPNGYSRVVWVEHMEIVGEEKplHPVFKDYVAG 508
                                   *******9999**********998888888*********************************98765449********** PP

                                   HHHHHHHHHHHHTXXXXX CS
                         START 188 glaegaktwvatlqrqce 205
                                   g+a+ga +wv+ lqrqce
  Zmw_sc00918.1.g00100.1.am.mk 509 GAAFGATRWVSLLQRQCE 526
                                   *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.97E-1965132IPR009057Homeodomain-like
PROSITE profilePS5007117.0771131IPR001356Homeobox domain
SMARTSM003891.1E-1972135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2072135IPR009057Homeodomain-like
CDDcd000868.95E-1974132No hitNo description
PfamPF000464.5E-1874129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PROSITE profilePS5084841.339281530IPR002913START domain
SuperFamilySSF559618.93E-24284526No hitNo description
SMARTSM002345.3E-16290527IPR002913START domain
CDDcd088757.16E-92301526No hitNo description
PfamPF018521.9E-30348526IPR002913START domain
SuperFamilySSF559611.51E-10538743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MGALQVSKDE EMELEMDMEL SGGSGSGHFD GLLGFADVDD DRPENKPQNG CLDIQPADGG  60
KQEQNNQLVV NGKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW  120
FQNRRTQMKA QQDRADNVLL RAENESLKGE NFRLQAAIRN VVCPNCGHAA VLGEMSFEEQ  180
QLRIENARLK EELDRLACIT TRYGGGGGWQ SSLSASGLGV STPSALLMPP VDLDMNVYSR  240
HFTYPPSIME NIPPVMALQP QISNHHAASS PYVSGLMAPV LEQDRQLVVD LAATAADALA  300
KMCRTGEPLW APRGGASAEV MVPEEHSRIF SWPVDGGKQS EASAANTTRT EGSRDSAVVI  360
MNSITLVDAF LNANKWMELF PSIVSKARII QVISHGAASG NMGSGSLLLM QADLQFPSPL  420
VPIREVVFFR YCVHNSDEGT WSIVDFPVEG FDLEVLQASS VVKSLRRPSG CMIQDMPNGY  480
SRVVWVEHME IVGEEKPLHP VFKDYVAGGA AFGATRWVSL LQRQCELIRT PEARANMMKL  540
SQRMITTFCA NISAAGSQSW TALSDCTEDT FRVATRKNTD LGQPSGVILT AVSTSWLPFS  600
HQRVFELLAD EQQRCQAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGDD  660
PSQIPLLPLG FAIFPAPNPS PAATSANSGN GESSSSGHTD EPASGCLLTV GMQVLASAVP  720
SAKLNLSSVT AINSHVCNAI HQITTALKGT GTPQAESPTA RRRVCEEESR ANQLRPHPGI  780
QGSLLLLSGF TVWLVAVAGV RLGVVHALVL PFLFLPRPSS YLNALPFCGV ASHWIPVFSR  840
FAFARDMLVS GVILVGRCLV GGGDMPLVVN ETTDCVVFRA LLSSSTASPA FLRALVRTRY  900
RRLCTARSRL SGFPRRIRTY EDSRSLSPHK ADDGASNDLA AWWDTEDLNS SSDACRATAS  960
MSSAQSHNSE ERAWTFCCST QSRDVLKYSA RRPSISSAWS SASDLSDNNS ASPGPTLLHY  1020
DRRISFCKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983555.10.0homeobox-leucine zipper protein ROC3
RefseqXP_004983556.10.0homeobox-leucine zipper protein ROC3
RefseqXP_022679045.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A3L6THL50.0A0A3L6THL5_PANMI; Homeobox-leucine zipper protein ROC3
STRINGSi034202m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441