PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00911.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 492aa    MW: 54222.8 Da    PI: 7.6442
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00911.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.3e-17229282356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Zmw_sc00911.1.g00130.1.am.mk 229 KKRRLNVEQVRTLEKNFELRNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 282
                                   4568999**********************************************9 PP
2HD-ZIP_I/II125.52.4e-40228319192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqv++LE++Fe ++kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da++++n++L 
  Zmw_sc00911.1.g00130.1.am.mk 228 EKKRRLNVEQVRTLEKNFELRNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVQADNDALL 308
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++L++e++
  Zmw_sc00911.1.g00130.1.am.mk 309 SQNKKLQAEVM 319
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-18211285IPR009057Homeodomain-like
SuperFamilySSF466895.56E-19220286IPR009057Homeodomain-like
PROSITE profilePS5007117.443224284IPR001356Homeobox domain
SMARTSM003891.2E-16227288IPR001356Homeobox domain
PfamPF000461.3E-14229282IPR001356Homeobox domain
CDDcd000861.15E-15229285No hitNo description
PRINTSPR000313.1E-5255264IPR000047Helix-turn-helix motif
PROSITE patternPS000270259282IPR017970Homeobox, conserved site
PRINTSPR000313.1E-5264280IPR000047Helix-turn-helix motif
PfamPF021831.4E-11284320IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEKESKWKRE REDERVQVEA ARSWENEQGH VRLWPRTNAG AGQARRGAPE VVGPHPRAVY  60
AALPLLQQLR SLVVNERGRG HEGANASHNL ASSVIHLRLQ RGRVHHTFTP VTYAHLRPMA  120
SNGMASSPSF FPPNFLLQMQ QAPPDHEPQE HHQHHHHLPP PPLHPHHNPF LPSSQCPSLQ  180
DFRGMAPMLG KRPMYGADVG GGDEVNGCGG GGGANEDELS DDGSQAGEKK RRLNVEQVRT  240
LEKNFELRNK LEPERKLQLA RALGLQPRQV AIWFQNRRAR WKTKQLEKDY DALKRQLDAV  300
QADNDALLSQ NKKLQAEVMS RLTLAELGSM WVSVLAAKRL LEAAAIGAAF SPARVILELK  360
GGREAGSELI NLNKKTEASC SNRSENSSEI NLDISRTPPS EGAMDPPAHH HPEHASNGGG  420
MIPFYPSSGR IAGVDIDQLL HSSSGPKIEQ QGNGARAGVQ APETASFSNL LCGVDEPPPF  480
WPWADHQPSI DD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276284RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.11e-173homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-126HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB51e-178A0A3L6SDB5_PANMI; Uncharacterized protein
STRINGPavir.Ia04323.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894