PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00909.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 716aa    MW: 78012.2 Da    PI: 6.6772
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00909.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152468147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Zmw_sc00909.1.g00270.1.am.mkhc 24 RERWTEAEHKRFLEALKLYGRQ-WQRIEEHVG-TKTAVQIRSHAQKF 68
                                    78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.8241973IPR017930Myb domain
TIGRFAMsTIGR015572.2E-162271IPR006447Myb domain, plants
SMARTSM007171.6E-122371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-82464IPR009057Homeodomain-like
PfamPF002495.8E-132467IPR001005SANT/Myb domain
CDDcd001672.38E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MEVNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRQWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAMNNG TSPGKAHDID IPPPRPKRKP NSPYPRKNGL NSETSTKEVS  120
NDKSTKSNIR LSSGNVEMAS HSSLQKLQRK EASEKGSCSE VLNLFREVPS ASFCSVNKTY  180
SNHGAPSGIE QAKTERDMTT LGKNPLSIDA HEGAKEINGS EMEKANGILI SSKSDRPHED  240
YLDTSTQEMK LKPMSVDTAY VGQQTAKTSH SVTEKNGATS VLATGTDGSH ADQTSDHDGA  300
NGRMNPCIHP TFSVDPKFNI NAAPLPCPHN YTALPPMMQC NCNQDAYRSF INMSSTLSSM  360
LVSTLLSNPA IHAAARLAAS YWPAAENNTS VDPNQENPTE CVQGSNIGSP QSMASMVAAT  420
VAAASAWWAT QGLLPFFTPP MAFPFAPAPS TAFPTADVRA SEKGRDCQVE NAQKECQEAQ  480
NQDQSESLRV AASSESDRSG KGDLSLQTEL KISPVQIADT TPTTVADTID AFKKKQDRSS  540
CGSNTPSSSD VEGDNVPGKQ DKGNDNAKQA SCSNSSAGDT NNRRFRSSGS TSDSWKEVSE  600
EGRLAFDALF SREKLPQSFS PPQGGESKEI SKEEEDEVTT VTVDLNKNAI AFDHDLDTMD  660
KSRASFSNEL SQLKLKSRRT GFKPYKRCSV EAKDNRVPAS DDVGTKRIRL ESEAST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820794.10.0protein LHY isoform X1
RefseqXP_025820795.10.0protein LHY isoform X1
TrEMBLA0A2T8IF630.0A0A2T8IF63_9POAL; Uncharacterized protein
STRINGPavir.Fa01905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447