PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00909.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 226aa MW: 25300.9 Da PI: 5.3472

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00909.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	84.6	8.9e-27	43	132	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kvltpsdv+k++rlv+pk++ae++ + ++++l +ed+ g W+++++y+++s++yv+tkGW+ Fv+a L +gD+v Zmw_sc00909.1.g00260.1.am.mk 43 FDKVLTPSDVGKLNRLVVPKQHAERFFPEAGNGTQLCFEDRAGAPWRFRYSYWGSSQSYVMTKGWSLFVRAASLAAGDTVS 123 89**********************666678889******************************************** PP EEE-SSSEE.. CS B3 82 Fkldgrsefel 92 F++ ++++ Zmw_sc00909.1.g00260.1.am.mk 124 FSR--GAGGRY 132 *93..345555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-36	36	140	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-27	40	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.73E-25	41	134	No hit	No description
PROSITE profile	PS50863	13.408	43	140	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-19	43	140	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-24	43	130	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MRMDLSLGTL VEATREVQEE HQADLGHQDR RQHGDAAERE HMFDKVLTPS DVGKLNRLVV 60 PKQHAERFFP EAGNGTQLCF EDRAGAPWRF RYSYWGSSQS YVMTKGWSLF VRAASLAAGD 120 TVSFSRGAGG RYFIDYRHCQ RRCQEISFGD TAAMSAWPWV QRTSSMTGGE GANATNPVSG 180 PPGIRHHDAE VGPSRAKCFR LFGFNVECSR DDDAAMEDEE DVDDDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-43	37	137	2	111	B3 domain-containing transcription factor NGA1
5os9_B	7e-43	37	137	2	111	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822547.1	7e-89	putative B3 domain-containing protein Os08g0157700
Swissprot	Q7EZD5	3e-71	Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBL	A0A2S3I0H6	2e-87	A0A2S3I0H6_9POAL; Uncharacterized protein
STRING	GRMZM2G180168_P01	1e-86	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14164	24	26