PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00900.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 193aa MW: 20562.2 Da PI: 10.4331 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 65.2 | 1.4e-20 | 149 | 193 | 4 | 48 |
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +++C a+l++ak+yh+rhkvCe+h+ka vv+v+g++qrfCqqCsr Zmw_sc00900.1.g00200.1.am.mk 149 ADRCGANLADAKRYHKRHKVCETHAKAHVVIVAGRQQRFCQQCSR 193 689*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 17.512 | 144 | 193 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-19 | 149 | 193 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.49E-18 | 149 | 193 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.5E-16 | 149 | 193 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MWFLYTYSRT AYAHVPRHGT GPHVRAVSTH VARWQDLFIS LSPFFPTAPA SSRPPSAHEH 60 ELKATAAPAP PRQPAGSYPS SPSTAPPPPP NLATMDRRDR TRRSTSAAAS MAALAAAAAA 120 GEGVENGTAT AMAEDMNTPT LLTGAASGAD RCGANLADAK RYHKRHKVCE THAKAHVVIV 180 AGRQQRFCQQ CSR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 7e-16 | 150 | 193 | 9 | 52 | squamosa promoter-binding protein-like 12 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP60778 | 2 | 2 |