PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00895.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 338aa    MW: 36778.8 Da    PI: 8.8285
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00895.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-2493137145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Zmw_sc00895.1.g00280.1.sm.mkhc  93 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 137
                                     79****************************************986 PP
2QLQ637.9e-222357236
                             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                     FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++i+
  Zmw_sc00895.1.g00280.1.sm.mkhc 23 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPIR 57
                                    5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-122258IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4682358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-162457IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.34693137IPR014977WRC domain
PfamPF088793.8E-2194136IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLSSAAMGMG GFPHQQQPRG AAVFTAAQWA ELEQQALIYK YLMAGVPVPP DLLLPIRPHS  60
AAAFSFGPAI GAASSFYHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS KEAHPDSKYC  120
ERHMHRGRNR SRKPVESKSA SPAHQSQPQL STVTNATRDT QPLQSLAMGA KTHGLSLGGA  180
GSSQLQVDAS SYGSKFSLGG KADVGELSFL SGASGNSRGF TIDSSSDSSW HSLSSNVPPF  240
TLSMTRESGL LSGAYNYSNL EPSQELGQVT IASLSQDQER HSFNSGTGGL MKQENQSLRP  300
FFDEWPATRD SWSEVDDARS NRTSFSTTQL SISIPRCD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641605.10.0growth-regulating factor 5 isoform X4
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0A9F0Q10.0A0A0A9F0Q1_ARUDO; Uncharacterized protein
STRINGOPUNC06G01050.10.0(Oryza punctata)
STRINGORGLA06G0010200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]