PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00894.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 443aa MW: 49154.8 Da PI: 7.4964 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++ +++G W++I +++g +t+ q++s+ qk+ Zmw_sc00894.1.g00100.1.sm.mkhc 56 REKWTEDEHKLFLESLQLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 100 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.32E-14 | 50 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.846 | 51 | 105 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-14 | 54 | 103 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.4E-12 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-12 | 56 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-8 | 56 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.68E-9 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MARFQEFEVR NDQIAAGGDV GLEDHLKNPL NSGVVDLPDE ERVPKARKPY TISKQREKWT 60 EDEHKLFLES LQLHGRAWRR IQEHIGSKTA VQIRSHAQKF FSKVTRESTA DGNGVVAAPR 120 IRIPPPRPKR KPTHPYPRKL GNSPGKGAPY RKLLDKPQLQ VVPSSYEQEN DSPKSVLTRA 180 QVVRSPASSV GAEDRCSAQR IAAVEVATQL PPYKVYNGDS VSKHSNCGIP ESPVLRLFGK 240 RVVVNGLHQQ PNLDPGNQQN VADMELDASA ETSTTGTEKL SSCGAAEANT LSPYPTDKHQ 300 FMYYLPQGKV LFVPSDCQFF SYNNGSMDCT VSNPQAKQQQ NQPSQAADCR FRSGEGSCTE 360 SITTSSSVPE TPTQNSESVD SVQVLAYNEE DEVIPVPGSR KYVNPNPDSL RGFVPYKYNA 420 EREMVQSQTD EVQADREMTR LCL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824173.1 | 1e-171 | uncharacterized protein LOC112899782 | ||||
TrEMBL | A0A2S3I9P7 | 1e-169 | A0A2S3I9P7_9POAL; Uncharacterized protein | ||||
STRING | Si010077m | 1e-168 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |