PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00890.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 757aa MW: 82360.8 Da PI: 7.8283

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00890.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	108	163	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k Zmw_sc00890.1.g00320.1.am.mk 108 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 163 688899***********************************************998 PP
2	START	117.4	2e-37	301	446	71	205
CT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TT CS START 71 qWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesss 141 +W e ++ ka t++v+ +g + + m+ el ++p+vp R+f f+Ry++q ++g w+ivdvS+d +++ + Zmw_sc00890.1.g00320.1.am.mk 301 KWMEFFPgivsKAHTVDVLVNGmcgrnESVIMMYEELHIMTPVVPtREFCFLRYCKQIEQGLWAIVDVSTDGQREAHYGVP 381 68888888888***********************************************************999988888 PP SEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 142 vvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205 R+++lpSg+li +++ng+skvtwveh++ + lp l+r lv sg+a+ga +wva+lqr c Zmw_sc00890.1.g00320.1.am.mk 382 PSRSRRLPSGCLIADMANGYSKVTWVEHMEIEQMLPiNVLYRNLVLSGAAFGAHRWVAALQRACD 446 89******************************999*********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.55E-20	92	165	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-22	99	167	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.864	105	165	IPR001356	Homeobox domain
SMART	SM00389	9.6E-20	106	169	IPR001356	Homeobox domain
CDD	cd00086	2.52E-19	107	166	No hit	No description
Pfam	PF00046	4.2E-18	108	163	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	140	163	IPR017970	Homeobox, conserved site
SMART	SM00234	2.4E-17	226	447	IPR002913	START domain
Pfam	PF01852	6.1E-32	299	446	IPR002913	START domain
CDD	cd08875	8.76E-70	300	445	No hit	No description
PROSITE profile	PS50848	32.763	301	450	IPR002913	START domain
SuperFamily	SSF55961	3.3E-21	301	448	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.6E-5	333	428	IPR023393	START-like domain
SuperFamily	SSF55961	6.32E-7	467	572	No hit	No description
SuperFamily	SSF55961	6.32E-7	626	744	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MIVVVGDRPA PHGPSDDWFI SRWETGRTAG ADAHAQYGQL VDRPSGPPLP DGLTTGRRRI 60 RRPEVSSIGS ALNSAGALDR PPDNWILQSP SVMDFGDEPE GSDSQRRRKR YHRHTPRQIQ 120 QLEAMFKECP HPDENQRAAL SRELGLEPRQ IKFWFQNRRT QMKAQHERAD NCFLRAENDK 180 IRCENITMSE ALKNVICPNC GGPPVAEDFF DEQKLRMENA RLKEELDRVS SITSKYLGRP 240 FTQMPPMPTM SASSLDLSVG GMPGPAFGGP GLDLDLLGGG SAGPGMCPSG LPCCFCLVQH 300 KWMEFFPGIV SKAHTVDVLV NGMCGRNESV IMMYEELHIM TPVVPTREFC FLRYCKQIEQ 360 GLWAIVDVST DGQREAHYGV PPSRSRRLPS GCLIADMANG YSKVTWVEHM EIEQMLPINV 420 LYRNLVLSGA AFGAHRWVAA LQRACDRVAS LAALGVPHHD PSGVTAEGKR GMMKLSQRMV 480 SCFCASLTSS PLQLWTTLSG TTDVSVRVST YRSADLGQHS GVVLGAAASI WLPVPSEHVF 540 AFVRNERTRS QVHVHTYRVR SRRLRHFINN ARGGVDVVTT SSCRATPLTD VSLTSPLLPQ 600 WDVLAHGNQV QEVSRITSGS NAGNCISLLR GLNSSQNSRL ILQESCTDAS GSMVVYSPID 660 LLAANVVMSG EDPSGIPLLP SGFAILPDGR PGTGSGASSS AGPPLAPPPG CLVTVAFQIV 720 VSSLPSSRLN EESVSTINSL VTSTVQNIRA ALNCTGP

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MIVVVGDRPA PHGPSDDWFI SRWETGRTAG ADAHAQYGQL VDRPSGPPLP DGLTTGRRRI  60
RRPEVSSIGS ALNSAGALDR PPDNWILQSP SVMDFGDEPE GSDSQRRRKR YHRHTPRQIQ  120
QLEAMFKECP HPDENQRAAL SRELGLEPRQ IKFWFQNRRT QMKAQHERAD NCFLRAENDK  180
IRCENITMSE ALKNVICPNC GGPPVAEDFF DEQKLRMENA RLKEELDRVS SITSKYLGRP  240
FTQMPPMPTM SASSLDLSVG GMPGPAFGGP GLDLDLLGGG SAGPGMCPSG LPCCFCLVQH  300
KWMEFFPGIV SKAHTVDVLV NGMCGRNESV IMMYEELHIM TPVVPTREFC FLRYCKQIEQ  360
GLWAIVDVST DGQREAHYGV PPSRSRRLPS GCLIADMANG YSKVTWVEHM EIEQMLPINV  420
LYRNLVLSGA AFGAHRWVAA LQRACDRVAS LAALGVPHHD PSGVTAEGKR GMMKLSQRMV  480
SCFCASLTSS PLQLWTTLSG TTDVSVRVST YRSADLGQHS GVVLGAAASI WLPVPSEHVF  540
AFVRNERTRS QVHVHTYRVR SRRLRHFINN ARGGVDVVTT SSCRATPLTD VSLTSPLLPQ  600
WDVLAHGNQV QEVSRITSGS NAGNCISLLR GLNSSQNSRL ILQESCTDAS GSMVVYSPID  660
LLAANVVMSG EDPSGIPLLP SGFAILPDGR PGTGSGASSS AGPPLAPPPG CLVTVAFQIV  720
VSSLPSSRLN EESVSTINSL VTSTVQNIRA ALNCTGP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438026.1	0.0	homeobox-leucine zipper protein ROC8
Swissprot	Q69T58	0.0	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	C5Z6D6	0.0	C5Z6D6_SORBI; Uncharacterized protein
STRING	Sb10g006820.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2912	37	70