PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00890.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 286aa MW: 30880.5 Da PI: 7.8178

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00890.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	53	100	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Edell+ +vk +G g+W+ ++++ ++R++k+c++rw++yl Zmw_sc00890.1.g00180.1.am.mk 53 RGAWTSKEDELLAAYVKAHGEGRWRDVPQRARLRRCGKSCRLRWLNYL 100 89********************************************97 PP
2	Myb_DNA-binding	50.7	4.1e-16	106	149	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Zmw_sc00890.1.g00180.1.am.mk 106 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNS 149 78999***************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-23	45	103	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.845	48	100	IPR017930	Myb domain
SuperFamily	SSF46689	8.8E-29	50	147	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-13	52	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	53	100	IPR001005	SANT/Myb domain
CDD	cd00167	2.84E-9	55	100	No hit	No description
PROSITE profile	PS51294	25.472	101	155	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-23	104	154	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	105	153	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-14	106	149	IPR001005	SANT/Myb domain
CDD	cd00167	9.24E-11	110	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0006970	Biological Process	response to osmotic stress
GO:0010023	Biological Process	proanthocyanidin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MCKRECPSIS TPEKEDEMPA LLAGSCALVS GNRGSRRGLM GRRACCAKEG VKRGAWTSKE 60 DELLAAYVKA HGEGRWRDVP QRARLRRCGK SCRLRWLNYL RPNIKRGNIS DDEEDLIIRL 120 HKLLGNRWSL IAGRLPGRTD NEIKNHWNSK LSRRVGAGGA AVSTPDAGYH STPTASTSCD 180 TGQASAHSGD WDSGSATAAI WAPKAVRCTG GSLFFLRDVP PEAETRTGGE GSDDCSSSAA 240 SIFAGAEEPC SSGGGGGDWM DDVRALASFL ESDDEWVRCQ MMTESL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	51	155	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812125.1	1e-107	anthocyanin regulatory C1 protein-like
Swissprot	P10290	5e-96	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A2S3HKW7	1e-105	A0A2S3HKW7_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PH97	1e-105	A0A3L6PH97_PANMI; C1-B73
STRING	Sb10g006700.1	1e-100	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]