PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00890.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 511aa MW: 54745 Da PI: 10.4757

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00890.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	93	137	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrg++rsrk++e+ Zmw_sc00890.1.g00140.1.am.mk 93 DPEPGRCRRTDGKKWRCSREAYGDSKYCEKHIHRGKNRSRKPVEA 137 79****************************************986 PP
2	QLQ	58	2.9e-20	19	53	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+a ++PvP++L+++++ Zmw_sc00890.1.g00140.1.am.mk 19 LFTASQWQELEHQALIYKYMATGAPVPHDLVVPLR 53 5*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.0E-9	18	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.295	19	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.4E-15	20	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.458	93	137	IPR014977	WRC domain
Pfam	PF08879	7.8E-20	94	136	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MMLSGHTGGA AAGRGGRRLF TASQWQELEH QALIYKYMAT GAPVPHDLVV PLRLATGVDT 60 VPSLAFPPQP PSLGYWGCYG AAAAQFGRKA AEDPEPGRCR RTDGKKWRCS REAYGDSKYC 120 EKHIHRGKNR SRKPVEATTS PATTVNNAAA YRPSALSISP PAPNAPAPPP SYGHVHHYHH 180 PLHHHGSNSA SPLQLHLDAA GYQYHAPSPP PSYHRYAHAH TSLFPGGYGG PSARELQEAE 240 LRRQRCLALG ADLSLDKPAA TATEKPLRRF FDEWNGGGDD ATQLSISMPT ASPSASRYHN 300 GCPRAATSRH CCPRSWRRST TVKALLSEVA AAWRSELSED AAARRLASLT PPFSPGCPHS 360 HAASTSGPLL APASSPSKRG KTGRGIWTRP RRWNDEEVFK TGTDSGDLLL HVRTTKSLRA 420 AALALGLVPR PPASASRSRG IILLTPKGGG EAQAQAAGVA TRDTPVSAPR PQRAVVLTVL 480 RAPPVLLCCR VLARGLGFFW IGIPSSVSFH L

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MMLSGHTGGA AAGRGGRRLF TASQWQELEH QALIYKYMAT GAPVPHDLVV PLRLATGVDT  60
VPSLAFPPQP PSLGYWGCYG AAAAQFGRKA AEDPEPGRCR RTDGKKWRCS REAYGDSKYC  120
EKHIHRGKNR SRKPVEATTS PATTVNNAAA YRPSALSISP PAPNAPAPPP SYGHVHHYHH  180
PLHHHGSNSA SPLQLHLDAA GYQYHAPSPP PSYHRYAHAH TSLFPGGYGG PSARELQEAE  240
LRRQRCLALG ADLSLDKPAA TATEKPLRRF FDEWNGGGDD ATQLSISMPT ASPSASRYHN  300
GCPRAATSRH CCPRSWRRST TVKALLSEVA AAWRSELSED AAARRLASLT PPFSPGCPHS  360
HAASTSGPLL APASSPSKRG KTGRGIWTRP RRWNDEEVFK TGTDSGDLLL HVRTTKSLRA  420
AALALGLVPR PPASASRSRG IILLTPKGGG EAQAQAAGVA TRDTPVSAPR PQRAVVLTVL  480
RAPPVLLCCR VLARGLGFFW IGIPSSVSFH L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964939.1	1e-118	growth-regulating factor 2
Swissprot	Q6AWY7	3e-92	GRF2_ORYSJ; Growth-regulating factor 2
TrEMBL	A0A1E5WIJ3	1e-119	A0A1E5WIJ3_9POAL; Growth-regulating factor 2
STRING	Pavir.Da01847.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13992	25	27