PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00881.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 611aa    MW: 70902.1 Da    PI: 8.1792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00881.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-0793112625
                                     -SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                     C+f+++tG C++G rC++ H
  Zmw_sc00881.1.g00130.1.am.mkhc  93 CPFHLKTGACRFGVRCSRVH 112
                                     ******************99 PP
2zf-CCCH24.54.8e-08208235126
                                     --S---SGGGGTS..--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                                     +k ++C  ++r+   tC++G+ C+F+H+
  Zmw_sc00881.1.g00130.1.am.mkhc 208 WKAAICGEYMRSRykTCSHGAACNFIHC 235
                                     7889***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.79887115IPR000571Zinc finger, CCCH-type
SMARTSM003562.488114IPR000571Zinc finger, CCCH-type
PRINTSPR018487.8E-1993112IPR009145U2 auxiliary factor small subunit
PfamPF006421.3E-593112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.5E-11156203IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.63E-9162203IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018487.8E-19189213IPR009145U2 auxiliary factor small subunit
SMARTSM003560.03207236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.756207237IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5208235IPR000571Zinc finger, CCCH-type
PRINTSPR018487.8E-19227239IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
EAERRWLEAA AARAAKRAAK AAEEEEARAA EASSRHKDGD GNKLEEDDEW EYVEEGPAEI  60
IWQGNEIIVK KKKVKVPKGV KEKLPTQEDK AHCPFHLKTG ACRFGVRCSR VHFYPDKSCT  120
LLMKHMYNGP GLALEQDEGL EAYNDPATWF HLIEGVQTVD LNGSFHLRGN VYVHYKSLDS  180
ALLAYNSMNG RYFAGKQISC EFVALTKWKA AICGEYMRSR YKTCSHGAAC NFIHCFRNPG  240
GDYEWSDWDN PPPKYWIRKM TALFGLSADT NSLSTTPDFE CSQGSDRKRL KSSGDRYVSR  300
RLKDEDGYKQ RFCRDYSHSM EEHCSRSMKN EQSRHRRDPH AVDKHRSREI EGNKGKYPQN  360
GRESHRHLHE ERYKSDHSGR VKGDDGKIRS RKNRSNQQGY LEPRSSDWHS DYTDLSNSPS  420
GRSTSRYVDY KRRRQSSEDY NTGKHSSFVH RSSEEEDRTK RHSSRYSEDD YYDKKNDYYD  480
EKNDGRGKTG KGGNHHDDSD DRWVATNSDV DSDYEIYQRS SSNSSNSERK DEAHSDAEAR  540
HQRSLMEAKD HKSSRRHSEH RQYRDTEEDT SYSDTTDSSS DSWGRRSRSS EEKVSKHRSR  600
RNIDQSREKA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-178623411167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808935.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ6YVX90.0C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A3L6QK650.0A0A3L6QK65_PANMI; Zinc finger CCCH domain-containing protein 16
STRINGPavir.Ab01939.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92961317
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]