PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00876.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 598aa MW: 63705.4 Da PI: 9.908

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00876.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	81.3	1.2e-25	466	512	5	56
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +YkeC++NhAa++Gg+a+D CgEfmp+ ++++lkC ACgCHR+FHRr Zmw_sc00876.1.g00080.1.am.mk 466 KYKECMRNHAAAMGGQAFDLCGEFMPD-----SPDSLKCVACGCHRSFHRRA 512 8***********************9.....799*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.6E-21	466	512	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-18	466	511	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-22	466	512	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.853	467	512	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MFERRAERAH PMAVSRSKLL PLPTNLLVAS GKALVFDQSR RRDRQTRRGA EKTRRGEAWR 60 EQAEEDAGAM VAACADCSGS WQGGQGGAVP LPSPSIGVLA RLDLALVSVP GLKPLLAPVR 120 CRSADSLCCV RARVALYDAK ARWITRQQSI VQDHSTRKLS GVSRCPCAPL HCPGAALYRS 180 RHAPSRRMPS GACVGLSRTN VHLLPFTSHP PDPHLHGDQV QCRARAVERC ATPSRDICTG 240 VTGGSVSIRL PLLPAFAFLP PSAPRGDAVP CVACVVTVVG GSDADEGPSP AEGHGLLAAP 300 LSNTGSSTHR RDFLSTSPPS YRIGAVRPGG PCAPPSPHVV GPRRGECHEY RLQCKLDTLP 360 AVNPRARGVS GAGLLAHVAR GEHRITPLNW HRCRSRSRKR LARVKRAQCR RDRTQAARTR 420 ARERDSVRLA DGVRRENSSG WWCWDMMEHL SLVPYEGSGG GGGGPKYKEC MRNHAAAMGG 480 QAFDLCGEFM PDSPDSLKCV ACGCHRSFHR RAAGTLPVFF RPPPPPHHKA DQNHHHLAAS 540 VPSAGAPGAT ASAIINPAAG TGTGTGIIPG VGDDDDDDTD DSPLRAAVSS PSLSPISV

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MFERRAERAH PMAVSRSKLL PLPTNLLVAS GKALVFDQSR RRDRQTRRGA EKTRRGEAWR  60
EQAEEDAGAM VAACADCSGS WQGGQGGAVP LPSPSIGVLA RLDLALVSVP GLKPLLAPVR  120
CRSADSLCCV RARVALYDAK ARWITRQQSI VQDHSTRKLS GVSRCPCAPL HCPGAALYRS  180
RHAPSRRMPS GACVGLSRTN VHLLPFTSHP PDPHLHGDQV QCRARAVERC ATPSRDICTG  240
VTGGSVSIRL PLLPAFAFLP PSAPRGDAVP CVACVVTVVG GSDADEGPSP AEGHGLLAAP  300
LSNTGSSTHR RDFLSTSPPS YRIGAVRPGG PCAPPSPHVV GPRRGECHEY RLQCKLDTLP  360
AVNPRARGVS GAGLLAHVAR GEHRITPLNW HRCRSRSRKR LARVKRAQCR RDRTQAARTR  420
ARERDSVRLA DGVRRENSSG WWCWDMMEHL SLVPYEGSGG GGGGPKYKEC MRNHAAAMGG  480
QAFDLCGEFM PDSPDSLKCV ACGCHRSFHR RAAGTLPVFF RPPPPPHHKA DQNHHHLAAS  540
VPSAGAPGAT ASAIINPAAG TGTGTGIIPG VGDDDDDDTD DSPLRAAVSS PSLSPISV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	399	RCRSRSRKR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13649	22	25