PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00869.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 273aa MW: 30963.4 Da PI: 4.9667

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00869.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.2	5.3e-43	10	154	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................kvkaeekewyfFsk 63 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp ++ +++++w+fFs+ Zmw_sc00869.1.g00250.1.sm.mk 10 PPGFRFSPTDEELVLYFLKRRISSGRPTP--YIADVDVYKFHPSHLPGtrvfpqsppvlaitrdlmtEI-TGDRQWFFFSR 87 9*******************9999555..6***********55899*999988865322.3789*** PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ky++g+r++r+t +gyWkatg+d+ v+s +g+ vg kktLv+++grap+ge+tdWvm ey++ Zmw_sc00869.1.g00250.1.sm.mk 88 LDRKYPNGSRASRTTGDGYWKATGRDRFVCSGgsGGRSVGNKKTLVYHHGRAPRGERTDWVMYEYTI 154 **************************98778889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-48	7	177	IPR003441	NAC domain
PROSITE profile	PS51005	48.746	9	177	IPR003441	NAC domain
Pfam	PF02365	3.4E-23	10	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MENSPPRRWP PGFRFSPTDE ELVLYFLKRR ISSGRPTPYI ADVDVYKFHP SHLPGTRVFP 60 QSPPVLAITR DLMTEITGDR QWFFFSRLDR KYPNGSRASR TTGDGYWKAT GRDRFVCSGG 120 SGGRSVGNKK TLVYHHGRAP RGERTDWVMY EYTILADALP QAAGAREAYA LYKLFQKSGV 180 GPKNGEQYGA PFREEDWLDD DEEQDLPAGA VIAIGDTCHG DPAGLMNYNS QDADESEFLE 240 IHDFFDLEDV EQTMNCTETE RLRNPEPGIS MYN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-38	10	154	16	140	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269\|PubMed:24045017}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold and drought stresses. {ECO:0000269\|PubMed:17158162}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802095.1	1e-109	NAC domain-containing protein 82-like
Swissprot	Q9XIC5	2e-65	NAC17_ARATH; NAC domain-containing protein 17
TrEMBL	A0A2S3H1B9	1e-107	A0A2S3H1B9_9POAL; Uncharacterized protein
STRING	Pavir.J04800.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9128	28	40

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Van Aken O,Ford E,Lister R,Huang S,Millar AH Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance. Plant J., 2016. 88(4): p. 542-558 [PMID:27425258] Hu Z, et al. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Plant Cell, 2016. 28(9): p. 2276-2290 [PMID:27543091] Chi YH, et al. The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis. Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647 [PMID:28088515] Van Aken O,Pogson BJ Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death. Cell Death Differ., 2017. 24(6): p. 955-960 [PMID:28498364] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]