PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00861.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 505aa MW: 53326.4 Da PI: 7.8192

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00861.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.7	1.3e-17	422	455	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ +Tp+WR gp g+ktLCnaCG++y++ + Zmw_sc00861.1.g00250.1.am.mk 422 CTHCQIESTPQWRAGPLGPKTLCNACGVRYKSGR 455 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	3.75E-14	416	478	No hit	No description
PROSITE profile	PS50114	11.543	416	452	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.0E-15	416	466	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.0E-14	420	453	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.26E-13	421	478	No hit	No description
Pfam	PF00320	3.4E-15	422	455	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	422	447	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MASLFIRARL GTQAKSRRSM ASGAFLDQML REQSLLEATC GDLFDHIEDL LDFSKEESAA 60 DVLLLDAPAP GSPLSARIID VGARSNAVEP SPALVAPAQD GLFVDAAAAG AQGFKDGGHI 120 GTVSSSVSCP YCWMVVSVMM TPRRRTGGAA PVPGDHRPCR SCEALHHSLR AQNNTRRGHS 180 GIRCAGWMIG AGWGVGALSL CLLFTVGLCD DLDMAQLEWL SGLFDDTSIP HEPAFPATCA 240 APIKSSELAA SAGLPMLPPD ELDDAVFRSS SPISVLEHNN NNAGSTSSSS SSSSSSSAWS 300 APVSPRAEPP ALVIPARARX XXVIPARARS KRSRASAFSG ARAVEPPTIL VPTPMYSAAS 360 SHSDPESIAE SNPDPAPPKK KKKAKKPAPA PAASDAEGDA DGDADYVEGG EHSRPQGAVR 420 RCTHCQIEST PQWRAGPLGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SIHSNSHKKV 480 VEMRQKAVRS GDPSCDLLQF IRRRD

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MASLFIRARL GTQAKSRRSM ASGAFLDQML REQSLLEATC GDLFDHIEDL LDFSKEESAA  60
DVLLLDAPAP GSPLSARIID VGARSNAVEP SPALVAPAQD GLFVDAAAAG AQGFKDGGHI  120
GTVSSSVSCP YCWMVVSVMM TPRRRTGGAA PVPGDHRPCR SCEALHHSLR AQNNTRRGHS  180
GIRCAGWMIG AGWGVGALSL CLLFTVGLCD DLDMAQLEWL SGLFDDTSIP HEPAFPATCA  240
APIKSSELAA SAGLPMLPPD ELDDAVFRSS SPISVLEHNN NNAGSTSSSS SSSSSSSAWS  300
APVSPRAEPP ALVIPARARX XXVIPARARS KRSRASAFSG ARAVEPPTIL VPTPMYSAAS  360
SHSDPESIAE SNPDPAPPKK KKKAKKPAPA PAASDAEGDA DGDADYVEGG EHSRPQGAVR  420
RCTHCQIEST PQWRAGPLGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SIHSNSHKKV  480
VEMRQKAVRS GDPSCDLLQF IRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807686.1	1e-145	GATA transcription factor 8-like
Refseq	XP_025807694.1	1e-145	GATA transcription factor 8-like
TrEMBL	A0A2T8KYD8	1e-143	A0A2T8KYD8_9POAL; Uncharacterized protein
STRING	Pavir.Ab03246.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5169	34	51