PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00857.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 284aa    MW: 30623.2 Da    PI: 8.1364
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00857.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.83.6e-2943118371
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......s 71 
                                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++        
  Zmw_sc00857.1.g00020.1.sm.mk  43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQdlmvghlP 118
                                   78*************************************************************8887733333220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-2744105IPR005333Transcription factor, TCP
PROSITE profilePS5136929.70444102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR  60
RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP  120
MPLMHEEKFD QLAAAAALAR ERAKAGHGDG AADAEGSGAH NMGRFPNIGY HHFMGLNSSF  180
AMVNSTMAYS NYSSEAWNNN MHENSAAGSP HVAAVAAAAA AGAQHSSLLS LAPGPHQLVF  240
YPSEGDQQFQ VDNLAGAQHS SLLSLAPGPH QLVFYPSEGD RSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2049103155Putative transcription factor PCF6
5zkt_B3e-2049103155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814168.11e-118transcription factor PCF5-like
RefseqXP_025814169.11e-118transcription factor PCF5-like
TrEMBLA0A3L6SMS61e-120A0A3L6SMS6_PANMI; Transcription factor PCF5-like
STRINGPavir.J15913.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584