PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00855.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 476aa MW: 51530.4 Da PI: 9.7188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00855.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	181	203	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Zmw_sc00855.1.g00050.1.am.mk 181 FVCEICGKGFQRDQNLQLHRRGH 203 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.41E-5	180	203	No hit	No description
SMART	SM00355	0.012	181	203	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	181	203	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-5	181	203	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	224	254	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.41E-5	254	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MVLALVVPFS LSPSSPSLLR RYLLTLFLSP RRLSLSLFLS ASAIKAGRFL LSLSPLRAAA 60 ARCKLSLSPG AWCLLAWCGE AALSSASQFS HTPVSSHRSS FFMFHQQQLL QEQGEAADQD 120 SSMSNLTSSA SGPNNPPPPP SPAPAASAGN NKRKRSLPGN PDPDAEVVAL SPATLVATNR 180 FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAAR KKVYVCPEAS CVHHDPARAL 240 GDLTGIKKHF FRKHGEKKWK CDKCSKKRDS FITHRAFCDA LTEESARAIG LNAAMHGAAP 300 VHQALLFSST SHSQQVMQQQ QHQELAAFQD QQHQQEVMQP QPPPPPPPPQ QVQEASQQQQ 360 QHCNYAMKTE MPSPWPTMPY DHHAHPLLQP LCAQSSATSA PPPPQQQQVP RASAHLSATA 420 LLQKAAQMGA TICTAGGGGL NAQQDAAMGG LARSTSHGRS GEDVTDLSFR SMQSHS

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MVLALVVPFS LSPSSPSLLR RYLLTLFLSP RRLSLSLFLS ASAIKAGRFL LSLSPLRAAA  60
ARCKLSLSPG AWCLLAWCGE AALSSASQFS HTPVSSHRSS FFMFHQQQLL QEQGEAADQD  120
SSMSNLTSSA SGPNNPPPPP SPAPAASAGN NKRKRSLPGN PDPDAEVVAL SPATLVATNR  180
FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAAR KKVYVCPEAS CVHHDPARAL  240
GDLTGIKKHF FRKHGEKKWK CDKCSKKRDS FITHRAFCDA LTEESARAIG LNAAMHGAAP  300
VHQALLFSST SHSQQVMQQQ QHQELAAFQD QQHQQEVMQP QPPPPPPPPQ QVQEASQQQQ  360
QHCNYAMKTE MPSPWPTMPY DHHAHPLLQP LCAQSSATSA PPPPQQQQVP RASAHLSATA  420
LLQKAAQMGA TICTAGGGGL NAQQDAAMGG LARSTSHGRS GEDVTDLSFR SMQSHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969529.1	1e-142	protein indeterminate-domain 7
TrEMBL	A0A1E5UV96	1e-144	A0A1E5UV96_9POAL; Protein indeterminate-domain 9
STRING	Si001287m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320