PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00846.1.g00300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 460aa MW: 50972.6 Da PI: 6.5558 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.2e-17 | 161 | 207 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l Zmw_sc00846.1.g00300.1.am.mkhc 161 KGQWTPEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 207 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 215 | 255 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+ Zmw_sc00846.1.g00300.1.am.mkhc 215 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 255 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.487 | 156 | 211 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-31 | 158 | 254 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 160 | 209 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-29 | 162 | 215 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.2E-17 | 164 | 220 | No hit | No description |
CDD | cd00167 | 6.25E-15 | 164 | 207 | No hit | No description |
PROSITE profile | PS51294 | 19.544 | 212 | 262 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 212 | 260 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.32E-13 | 216 | 258 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 216 | 260 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MLYFSPFHEN DAGRQQHCFS IFSRTIYIAA FEISMDFSCF QPHGGSCSHM PFDSCAQPNG 60 RCELHPVDHP FEGSIGECAA AGSAAVSFAT FNDLGHQYYS ERESKRPVVS QVGSYLPLLT 120 PKTEASHLMG CGLGSYEMNG RFVTRSRKAS SNSLKKANVV KGQWTPEEDR KLVKLVEQFG 180 LRKWSCIAQI LPGRVGKQCR ERWHNHLRPN IKKDIWSDEE DMVLIQAHKE VGNKWAEIAK 240 RLPGRTENSI KNHWNATKRR QFARRRSRSS KGPKSGTLLQ SYIKSLGIGP TSRKNVLAAA 300 PLAAQLPPAL PPPSPAFPVP KQAKRDSEHS PLNENNCGEV SLSFEELLAP ICDEFSVDMC 360 DGLFDANDEV FQVCGIDDDF VDMNCIFNHL DYACNSGDHG MDMEMAWDDV DALADCVGLE 420 MESGSSSAAR VETAAQVKKE IDLVEMMAAT TKKSAGAEDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-47 | 159 | 261 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-47 | 159 | 261 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796038.1 | 1e-166 | transcription factor MYB41-like | ||||
TrEMBL | A0A1E5V2V3 | 1e-176 | A0A1E5V2V3_9POAL; Transcription factor MYB98 | ||||
STRING | Pavir.J02497.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |