PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00843.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 296aa MW: 30991.8 Da PI: 8.6983

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00843.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	25.3	3.6e-08	35	52	4	21
ZF-HD_dimer 4 vrYkeClkNhAaslGgha 21 +Y+eClkNhAaslGgha Zmw_sc00843.1.g00150.1.am.mk 35 PMYRECLKNHAASLGGHA 52 57***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	0.006	6	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.8E-5	36	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.66E-16	146	216	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-28	149	217	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.8E-23	158	214	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEAMDVKYKT AAFPNGGAVK KVKPAAVAPA AVGEPMYREC LKNHAASLGG HAPPRREETP 60 EDRVPAVVDG DDSDSDSDAS EYDEERSLSP PVLHHFPAPV AQQPPPPPAP YIPSAPHMLL 120 SLGSGAPGAA ITAVQRLPVH QLTSPSSAPP GGGGAVPRKR FRTKFTAEQK QRMQELSERL 180 GWRLQKRDEA IVDEWCRDIG VGKGVFKVWM HNNKHNFLGG HSARRSASAS AYSGAPTAAA 240 PLHTPTPAGS APPFHPSVAS PPPPPVLTSS PPAAPAPTVP AGHQENINGS SSPQSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	7e-21	158	216	17	75	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698877.1	6e-80	zinc-finger homeodomain protein 9
Swissprot	Q6ER21	1e-53	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	A0A0A9JHD4	9e-93	A0A0A9JHD4_ARUDO; Uncharacterized protein
STRING	GRMZM2G161315_P01	4e-76	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74