PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00834.1.g00250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 444aa    MW: 47537.3 Da    PI: 9.7548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00834.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-1660104147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT++E+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  Zmw_sc00834.1.g00250.1.sm.mkhc  60 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 104
                                     789*****************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1554107IPR009057Homeodomain-like
PROSITE profilePS5129419.73255109IPR017930Myb domain
TIGRFAMsTIGR015573.3E-1658107IPR006447Myb domain, plants
SMARTSM007171.7E-1259107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-960100IPR009057Homeodomain-like
PfamPF002496.3E-1460103IPR001005SANT/Myb domain
CDDcd001678.26E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MTCLERKTMA TDENAVGDRA AGENAVDHGN NHPGPGGMDL AGDGDHVPKT RKPYTITKQR  60
EKWTEDEHRR FLEALQLHGR AWRRIQEHIG TKTAVQIRSH AQKFFTKVVT VVRESSGSNG  120
GSGAGAPSIQ IPPPRPKRKP AHPYPRKVDG AAKKHAPTLK RLKKPPVRRM QSLREQDDGS  180
PTSVLTAAQT VLRADALDGA FSNTWSGGDR SRAPSVVGSD ERGNGGGSSA FCDAKDCAGS  240
EASVFKLFGK KVAVKDSYQH LQNGRNLKID VSPACVTKPT GNAIPCAGAN SWNHLWPGNM  300
QQVMYFLPGP GSFPAQSVMP WLGYNGSMPC SLFYPQAVTS NQEHHIPSES PDPEGSLTGS  360
NTASSVAPAS AAQNSDAVES RAEQGKASES VTKPAVKRLL KCPSSASTNR RGFMPYKRCA  420
AESDAPRSVA PGEEADGELT RLCL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814514.11e-173protein REVEILLE 1-like
TrEMBLA0A1E5VGC71e-172A0A1E5VGC7_9POAL; Protein LHY (Fragment)
STRINGSi017289m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686