PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00834.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 408aa    MW: 44112.3 Da    PI: 9.5404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00834.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.56.2e-2999191189
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++       + ++  l++ed+ g++W+++++y+++s++yv+tkGW++Fvk+++L + 
  Zmw_sc00834.1.g00160.1.am.mk  99 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANGKGLLLSFEDSAGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAT 179
                                   89*************************999444567889****************************************** PP

                                   -EEEEEE-SSSE CS
                            B3  78 DfvvFkldgrse 89 
                                   D+v F++   ++
  Zmw_sc00834.1.g00160.1.am.mk 180 DTVSFSRGAAED 191
                                   ******653333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-4092203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2896205IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-2497186No hitNo description
PROSITE profilePS5086313.73399202IPR003340B3 DNA binding domain
SMARTSM010192.2E-2099204IPR003340B3 DNA binding domain
PfamPF023622.4E-2699197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDQFPASGRF SKEEEADEEQ EDASNSMREI PFMAACSVAT AASSSVAAAS ASSQSLASAS  60
ASSSAPFRSA LGDGGGASGS GAGEEEGKAD RAVEKEHMFD KVVTPSDVGK LNRLVIPKQY  120
AEKYFPLDAA ANGKGLLLSF EDSAGKQWRF RYSYWNSSQS YVMTKGWSRF VKEKRLVATD  180
TVSFSRGAAE DARHRLFIDW KRRIDSRDPF RFPRLALPMP LASHYGPHHY RPWGFGGGGS  240
GFFVPPSPPA TLYEHRLRQG LDFRGMNYHP APAVGRQLFY FGAARMPQHA PILPRAPSPL  300
HYTVQPTSAP PVVLDSVPVI ESPTAAAKRV RLFGVNLDNQ DSAGGGGGEP SNLQGNALSL  360
QMPGWQQRAP TLRLLEFPRR GAESSAASSP SLSSSSKREA RSALDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-55942033113B3 domain-containing transcription factor NGA1
5os9_B9e-55942033113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794708.11e-174B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-143Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2S3GSD91e-172A0A2S3GSD9_9POAL; Uncharacterized protein
STRINGPavir.Aa00929.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]