PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00834.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 467aa    MW: 50577.7 Da    PI: 8.9063
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00834.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.6e-133478147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Zmw_sc00834.1.g00070.1.sm.mkhc 34 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 78
                                    789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-162884IPR009057Homeodomain-like
PROSITE profilePS5129415.4082983IPR017930Myb domain
TIGRFAMsTIGR015572.4E-183281IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-63284IPR009057Homeodomain-like
SMARTSM007175.3E-113381IPR001005SANT/Myb domain
PfamPF002494.4E-113478IPR001005SANT/Myb domain
CDDcd001674.03E-83679No hitNo description
SuperFamilySSF697651.31E-50331467IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Gene3DG3DSA:3.30.1330.505.3E-59331467IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
PfamPF025421.1E-53332467IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
HamapMF_0010726.066332467IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
TIGRFAMsTIGR001511.1E-51333467IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
CDDcd005541.99E-77333467No hitNo description
PROSITE patternPS013500366381IPR0205552-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016114Biological Processterpenoid biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0008685Molecular Function2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVSAGTPPAQ PDAAAAGDDG SKKVRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE  60
AFVGSKTVIQ IRSHAQKYFL KVQKNESNYA LKTDSSSVHR NSSMKANVLL WAHNSVQPVV  120
ASSMKLKEMN PIDVETALLL MRNLSINLTS PDFEDQAAFL KNSTPCNSNV FRVSLDWKAR  180
ANFGQNARAA GHQESATATY LSTLPKLSCR NRIASQTLDA HLAFAQIIPA HEKRSLSPRA  240
GPRNELGHCA IPAAPTGSSS GVMATVPSSS LFLSSSPIST APRARAGPAQ PCLSPCQPAL  300
RLRRTSQVVA TAVQAEHQPA VAAAPMPPAL PFRVGHGFDL HRLEPDLPLI IGGINIPHDR  360
GCDAHSDGDV LLHCVVDAIL GALGLPDIGQ IFPDSDPRWK GADSSVFMRE AVKLMHEAGY  420
ELGNLDATLI LQKPKLSPFK ETIRSNLCEL LGADPSVVNL KAKTHEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2pmp_A1e-8433046721392-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452756.21e-1272-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic
TrEMBLA0A1D6Q7041e-138A0A1D6Q704_MAIZE; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase