PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00834.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 452aa    MW: 48280.2 Da    PI: 10.7196
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00834.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.63e-25358402145
                           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                   ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  Zmw_sc00834.1.g00010.1.am.mk 358 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 402
                                   69****************************************985 PP
2QLQ51.92.2e-18232268137
                           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                   sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  Zmw_sc00834.1.g00010.1.am.mk 232 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 268
                                   799********************************97 PP
3QLQ51.92.2e-18292328137
                           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                   sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  Zmw_sc00834.1.g00010.1.am.mk 292 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 328
                                   799********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-6232268IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.225233268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-10233267IPR014978Glutamine-Leucine-Glutamine, QLQ
SMARTSM009516.5E-6292328IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-10293327IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.225293328IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.701358402IPR014977WRC domain
PfamPF088798.8E-21359401IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MARSCSASAS VRATASAFAA AAQCALPMRE MKMLQCSTVF YSWRRGVSPL EAARSRVATT  60
SSITQRNTNT AEKELVKSAC SFQTQEYHRR AACFPSLLSR TCPRLLPSRA VTPYRSGVVR  120
IGARAVHQRR SLAFQMADDK ETTDSAQPPS KLPRLSSAAD SNAGACTACA TVYGKWRRGG  180
AVDRFGLLFC VGTVTMAASS PLVLGLGLGL GGDGGGVERD AEAASTTSKA RSALTFMQQQ  240
ELEHQVLIYR YFAAGAPVPV HLVLPIWKSV AASSFGPQRF PSPASTTSKA RSALTFMQQQ  300
ELEHQVLIYR YFAAGAPVPV HLVLPIWKSV AASSFGPQRF PSLMGLGSLC FDYRNSMEPE  360
PGRCRRTDGK KWRCSRDVVP GHKYCERHVH RGRGRSRKPV EAAAAASTGA PAHNAPLAAV  420
HHHGHAGASP AAAGLGFSPT SVLLAHSAAR AT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646054.16e-89growth-regulating factor 10
SwissprotQ6EPP93e-81GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A3L6EVB21e-87A0A3L6EVB2_MAIZE; Growth-regulating factor 10
TrEMBLA0A3L6QJU11e-87A0A3L6QJU1_PANMI; Growth-regulating factor 10-like
STRINGGRMZM2G045977_P012e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]