PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00817.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 37771.2 Da PI: 6.4079 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W+ ++ + g+ R++k+c++rw +yl Zmw_sc00817.1.g00060.1.am.mk 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++ Zmw_sc00817.1.g00060.1.am.mk 67 RGRFSAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.363 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.15E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.49 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.96E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PDKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF SAEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPA 120 STTSSSSVSP PCSTVTAASD AAHGHLQTLP FSVADHQLDA MIINQGLALP SSTKLAVAGQ 180 DSPPTAPLPP QHCPFFMFDT SASPPSSLSP PTAAQLQHPF LTFTTAAVDV PSYQLPPLVD 240 GMSMNMSALD CSSLGDYERG HDHDGNNGQA APGMSSNGGC CGYEQQKQQH EQQQQQLGHD 300 QWDDESAQHL LMWDDDQELT PSNLEVMQTG AHSLLFMGPN DHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822193.1 | 1e-164 | myb-related protein 308 | ||||
TrEMBL | A0A2T7D3G1 | 1e-176 | A0A2T7D3G1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00364.1.p | 1e-166 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6032 | 37 | 57 |