PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00806.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 473aa MW: 50636.6 Da PI: 8.9979 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 240 | 263 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C dC+++F ++L+ H t H Zmw_sc00806.1.g00230.1.am.mk 240 FPCADCDEVFVKAESLELHRATrH 263 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.141 | 240 | 268 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 242 | 263 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.45E-16 | 265 | 472 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 6.4E-10 | 266 | 471 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MMARCPCMPR QAFDLGIRGL TCLFIRLPPR TITKDERPKR VVKGAISKLI MHGADKGATK 60 KKMNGEAGKT TTKKPSHSWM TMGLYYPSSG KSGGQAKAAM STEGKNGGNN EKCNSGGDKK 120 KRSMSLSITR SVACAGSICS TKESSVMSRD RGASASSRSL RAPNDVVSAA AVSATSSFNS 180 EATATTTVTV SSSSLFSSAL SSPLSSLGGS SFRGVQIRKL SGCYSCQSVF DPRSLDTSTF 240 PCADCDEVFV KAESLELHRA TRHAVSELGP EDTSRNIVQI IFQSSWLRKQ APVCRIERIL 300 KVQSGDGTVK RFEQYKESIK ERASNDQGKK NARCVADGNE LLRFYATTFT CALGASGGTA 360 LCGAPWTQCK LCGIIKDGFR VDEEGKIAVM ATSGRAHDMA DALSDGEKKA MLVCRVVAGR 420 VKRATDDTEL SEESDCDSVS PCSSDGVYSD LDELLVFNPR AILPCFVVIY SGY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002449060.2 | 1e-167 | cell wall integrity and stress response component 1 | ||||
TrEMBL | A0A1B6PQ86 | 1e-165 | A0A1B6PQ86_SORBI; Uncharacterized protein | ||||
STRING | Sb05g004260.1 | 1e-166 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |