PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00804.1.g00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 330aa    MW: 34788.8 Da    PI: 10.8119
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00804.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.53.8e-12236260125
                         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                     C gCrt+L YP GApsV+Ca+C+++
  Zmw_sc00804.1.g00200.1.am.mkhc 236 CRGCRTVLLYPQGAPSVCCAVCQAI 260
                                     9**********************97 PP

2zf-LSD121.83.3e-07275288114
                         zf-LSD1   1 CggCrtlLsYPrGA 14 
                                     CggCrtlL+Y+r+A
  Zmw_sc00804.1.g00200.1.am.mkhc 275 CGGCRTLLMYTRNA 288
                                     ************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.6E-11233263IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-10236260IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-6272288IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-4275288IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MPKNNSSQSI SKFSRHGMTA SIDPVEQDEA RGFLVAAAAS PASARPRGNG DQTGGRAPAS  60
ACKRSTDQTP RKKAGNQFLS INTFSCAQKS LKRADETQSD RKPTPPPPRF SRRGEEIPAA  120
LARPSSPEPY LPASHPPAPL RVGDSGDRRT ASPDARTPVS GILLHLHAFL GLDRARPSYR  180
ASASIGRVRV GAPRASLGWM IDLLIGFGAG VPARTVRRRS GGVVAFASCM QNQIVCRGCR  240
TVLLYPQGAP SVCCAVCQAI TTVPPPGLEM AQLICGGCRT LLMYTRNADT PKTQPQNVTV  300
VVENPMTVDE KGKLVSNVAV GVTAGSAGKN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2222047