PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00804.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 330aa MW: 34788.8 Da PI: 10.8119

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00804.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.5	3.8e-12	236	260	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ Zmw_sc00804.1.g00200.1.am.mkhc 236 CRGCRTVLLYPQGAPSVCCAVCQAI 260 9**********************97 PP
2	zf-LSD1	21.8	3.3e-07	275	288	1	14
zf-LSD1 1 CggCrtlLsYPrGA 14 CggCrtlL+Y+r+A Zmw_sc00804.1.g00200.1.am.mkhc 275 CGGCRTLLMYTRNA 288 ************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.6E-11	233	263	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.4E-10	236	260	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.5E-6	272	288	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-4	275	288	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MPKNNSSQSI SKFSRHGMTA SIDPVEQDEA RGFLVAAAAS PASARPRGNG DQTGGRAPAS 60 ACKRSTDQTP RKKAGNQFLS INTFSCAQKS LKRADETQSD RKPTPPPPRF SRRGEEIPAA 120 LARPSSPEPY LPASHPPAPL RVGDSGDRRT ASPDARTPVS GILLHLHAFL GLDRARPSYR 180 ASASIGRVRV GAPRASLGWM IDLLIGFGAG VPARTVRRRS GGVVAFASCM QNQIVCRGCR 240 TVLLYPQGAP SVCCAVCQAI TTVPPPGLEM AQLICGGCRT LLMYTRNADT PKTQPQNVTV 300 VVENPMTVDE KGKLVSNVAV GVTAGSAGKN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22220	4	7